Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23320 and AO356_23325 are separated by 232 nucleotides AO356_23325 and AO356_23330 are separated by 23 nucleotides
AO356_23320: AO356_23320 - 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase, at 5,229,290 to 5,230,405
_23320
AO356_23325: AO356_23325 - short-chain dehydrogenase, at 5,230,638 to 5,231,405
_23325
AO356_23330: AO356_23330 - aminoglycoside phosphotransferase, at 5,231,429 to 5,232,496
_23330
Position (kb) 5230
5231
5232 Strain fitness (log2 ratio) -1
0
1 at 5230.011 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.011 kb on + strand, within AO356_23320 at 5230.684 kb on + strand at 5230.684 kb on + strand at 5230.684 kb on + strand at 5230.685 kb on - strand at 5230.685 kb on - strand at 5230.685 kb on - strand at 5230.709 kb on - strand at 5230.924 kb on + strand, within AO356_23325 at 5230.924 kb on + strand, within AO356_23325 at 5230.924 kb on + strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5230.925 kb on - strand, within AO356_23325 at 5231.444 kb on - strand at 5231.538 kb on + strand, within AO356_23330 at 5231.541 kb on + strand, within AO356_23330 at 5231.541 kb on + strand, within AO356_23330 at 5231.542 kb on - strand, within AO356_23330 at 5231.542 kb on - strand, within AO356_23330 at 5231.542 kb on - strand, within AO356_23330 at 5231.580 kb on + strand, within AO356_23330 at 5231.580 kb on + strand, within AO356_23330 at 5231.581 kb on - strand, within AO356_23330 at 5231.581 kb on - strand, within AO356_23330 at 5231.581 kb on - strand, within AO356_23330 at 5231.586 kb on + strand, within AO356_23330 at 5231.586 kb on + strand, within AO356_23330 at 5231.587 kb on - strand, within AO356_23330 at 5231.587 kb on - strand, within AO356_23330 at 5231.587 kb on - strand, within AO356_23330 at 5231.590 kb on - strand, within AO356_23330 at 5231.590 kb on - strand, within AO356_23330 at 5231.590 kb on - strand, within AO356_23330 at 5231.590 kb on - strand, within AO356_23330 at 5231.590 kb on - strand, within AO356_23330 at 5231.590 kb on - strand, within AO356_23330 at 5231.635 kb on - strand, within AO356_23330 at 5231.635 kb on - strand, within AO356_23330 at 5231.991 kb on + strand, within AO356_23330 at 5231.992 kb on - strand, within AO356_23330 at 5231.992 kb on - strand, within AO356_23330 at 5232.033 kb on + strand, within AO356_23330 at 5232.033 kb on + strand, within AO356_23330 at 5232.081 kb on - strand, within AO356_23330 at 5232.165 kb on + strand, within AO356_23330 at 5232.166 kb on - strand, within AO356_23330 at 5232.166 kb on - strand, within AO356_23330 at 5232.207 kb on + strand, within AO356_23330 at 5232.207 kb on + strand, within AO356_23330 at 5232.207 kb on + strand, within AO356_23330 at 5232.207 kb on + strand, within AO356_23330 at 5232.207 kb on + strand, within AO356_23330 at 5232.208 kb on - strand, within AO356_23330 at 5232.208 kb on - strand, within AO356_23330 at 5232.208 kb on - strand, within AO356_23330 at 5232.348 kb on + strand, within AO356_23330 at 5232.348 kb on + strand, within AO356_23330 at 5232.348 kb on + strand, within AO356_23330
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,230,011 + AO356_23320 0.65 +0.4 5,230,011 + AO356_23320 0.65 -0.2 5,230,011 + AO356_23320 0.65 -0.7 5,230,011 + AO356_23320 0.65 +1.4 5,230,684 + -0.1 5,230,684 + -0.2 5,230,684 + -0.3 5,230,685 - -1.4 5,230,685 - +0.9 5,230,685 - +0.2 5,230,709 - -0.7 5,230,924 + AO356_23325 0.37 +1.3 5,230,924 + AO356_23325 0.37 +1.4 5,230,924 + AO356_23325 0.37 -0.9 5,230,925 - AO356_23325 0.37 +0.1 5,230,925 - AO356_23325 0.37 +0.0 5,230,925 - AO356_23325 0.37 -0.3 5,230,925 - AO356_23325 0.37 +0.7 5,231,444 - -1.7 5,231,538 + AO356_23330 0.10 +0.0 5,231,541 + AO356_23330 0.10 +0.3 5,231,541 + AO356_23330 0.10 +0.3 5,231,542 - AO356_23330 0.11 +0.1 5,231,542 - AO356_23330 0.11 -0.8 5,231,542 - AO356_23330 0.11 +0.1 5,231,580 + AO356_23330 0.14 +0.1 5,231,580 + AO356_23330 0.14 +0.2 5,231,581 - AO356_23330 0.14 +0.6 5,231,581 - AO356_23330 0.14 -1.7 5,231,581 - AO356_23330 0.14 +1.3 5,231,586 + AO356_23330 0.15 -0.1 5,231,586 + AO356_23330 0.15 -0.4 5,231,587 - AO356_23330 0.15 +1.3 5,231,587 - AO356_23330 0.15 -0.5 5,231,587 - AO356_23330 0.15 -0.2 5,231,590 - AO356_23330 0.15 -0.2 5,231,590 - AO356_23330 0.15 +0.9 5,231,590 - AO356_23330 0.15 -0.3 5,231,590 - AO356_23330 0.15 +0.4 5,231,590 - AO356_23330 0.15 +0.2 5,231,590 - AO356_23330 0.15 -0.3 5,231,635 - AO356_23330 0.19 +0.7 5,231,635 - AO356_23330 0.19 -0.6 5,231,991 + AO356_23330 0.53 +0.2 5,231,992 - AO356_23330 0.53 -0.9 5,231,992 - AO356_23330 0.53 -0.9 5,232,033 + AO356_23330 0.57 -0.4 5,232,033 + AO356_23330 0.57 +0.4 5,232,081 - AO356_23330 0.61 +0.2 5,232,165 + AO356_23330 0.69 -0.1 5,232,166 - AO356_23330 0.69 -0.1 5,232,166 - AO356_23330 0.69 -0.6 5,232,207 + AO356_23330 0.73 -1.2 5,232,207 + AO356_23330 0.73 +1.5 5,232,207 + AO356_23330 0.73 +0.8 5,232,207 + AO356_23330 0.73 +0.2 5,232,207 + AO356_23330 0.73 +0.4 5,232,208 - AO356_23330 0.73 -0.5 5,232,208 - AO356_23330 0.73 -0.3 5,232,208 - AO356_23330 0.73 -0.4 5,232,348 + AO356_23330 0.86 -1.1 5,232,348 + AO356_23330 0.86 -0.3 5,232,348 + AO356_23330 0.86 -0.3
Or see this region's nucleotide sequence