Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22950 and AO356_22955 are separated by 44 nucleotides AO356_22955 and AO356_22960 are separated by 66 nucleotides AO356_22960 and AO356_22965 are separated by 109 nucleotides
AO356_22950: AO356_22950 - peptidylprolyl isomerase, at 5,124,478 to 5,124,819
_22950
AO356_22955: AO356_22955 - ArsR family transcriptional regulator, at 5,124,864 to 5,125,631
_22955
AO356_22960: AO356_22960 - AraC family transcriptional regulator, at 5,125,698 to 5,126,489
_22960
AO356_22965: AO356_22965 - hypothetical protein, at 5,126,599 to 5,127,528
_22965
Position (kb) 5125
5126
5127 Strain fitness (log2 ratio) -2
-1
0
1 at 5124.886 kb on + strand at 5124.887 kb on - strand at 5124.887 kb on - strand at 5124.887 kb on - strand at 5124.887 kb on - strand at 5125.083 kb on + strand, within AO356_22955 at 5125.084 kb on - strand, within AO356_22955 at 5125.086 kb on + strand, within AO356_22955 at 5125.086 kb on + strand, within AO356_22955 at 5125.087 kb on - strand, within AO356_22955 at 5125.706 kb on + strand at 5125.706 kb on + strand at 5125.707 kb on - strand at 5125.707 kb on - strand at 5125.707 kb on - strand at 5125.995 kb on + strand, within AO356_22960 at 5126.032 kb on + strand, within AO356_22960 at 5126.032 kb on + strand, within AO356_22960 at 5126.033 kb on - strand, within AO356_22960 at 5126.218 kb on + strand, within AO356_22960 at 5126.219 kb on - strand, within AO356_22960 at 5126.219 kb on - strand, within AO356_22960 at 5126.308 kb on + strand, within AO356_22960 at 5126.309 kb on - strand, within AO356_22960 at 5126.309 kb on - strand, within AO356_22960 at 5126.309 kb on - strand, within AO356_22960 at 5126.347 kb on + strand, within AO356_22960 at 5126.348 kb on - strand, within AO356_22960 at 5126.348 kb on - strand, within AO356_22960 at 5126.389 kb on + strand, within AO356_22960 at 5126.536 kb on + strand at 5126.537 kb on - strand at 5126.537 kb on - strand at 5126.537 kb on - strand at 5126.539 kb on - strand at 5126.539 kb on - strand at 5126.880 kb on + strand, within AO356_22965 at 5126.913 kb on + strand, within AO356_22965 at 5127.123 kb on - strand, within AO356_22965 at 5127.169 kb on + strand, within AO356_22965 at 5127.169 kb on + strand, within AO356_22965 at 5127.169 kb on + strand, within AO356_22965 at 5127.169 kb on + strand, within AO356_22965 at 5127.169 kb on + strand, within AO356_22965 at 5127.169 kb on + strand, within AO356_22965 at 5127.170 kb on - strand, within AO356_22965 at 5127.328 kb on + strand, within AO356_22965 at 5127.328 kb on + strand, within AO356_22965 at 5127.329 kb on - strand, within AO356_22965 at 5127.329 kb on - strand, within AO356_22965 at 5127.419 kb on + strand, within AO356_22965 at 5127.426 kb on + strand, within AO356_22965 at 5127.427 kb on - strand, within AO356_22965
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,124,886 + -0.2 5,124,887 - -0.1 5,124,887 - -0.9 5,124,887 - +0.4 5,124,887 - +0.8 5,125,083 + AO356_22955 0.29 +0.8 5,125,084 - AO356_22955 0.29 -1.2 5,125,086 + AO356_22955 0.29 +1.1 5,125,086 + AO356_22955 0.29 -0.3 5,125,087 - AO356_22955 0.29 +0.0 5,125,706 + -0.2 5,125,706 + +0.0 5,125,707 - -0.4 5,125,707 - -0.4 5,125,707 - -0.6 5,125,995 + AO356_22960 0.38 +0.9 5,126,032 + AO356_22960 0.42 -1.5 5,126,032 + AO356_22960 0.42 +0.9 5,126,033 - AO356_22960 0.42 -1.3 5,126,218 + AO356_22960 0.66 +1.1 5,126,219 - AO356_22960 0.66 -0.4 5,126,219 - AO356_22960 0.66 +1.3 5,126,308 + AO356_22960 0.77 +0.1 5,126,309 - AO356_22960 0.77 -0.2 5,126,309 - AO356_22960 0.77 +0.9 5,126,309 - AO356_22960 0.77 -0.0 5,126,347 + AO356_22960 0.82 -0.5 5,126,348 - AO356_22960 0.82 -0.5 5,126,348 - AO356_22960 0.82 -0.3 5,126,389 + AO356_22960 0.87 -2.2 5,126,536 + +1.6 5,126,537 - -0.2 5,126,537 - -0.1 5,126,537 - +1.2 5,126,539 - -0.0 5,126,539 - -0.1 5,126,880 + AO356_22965 0.30 +0.7 5,126,913 + AO356_22965 0.34 +0.2 5,127,123 - AO356_22965 0.56 +0.2 5,127,169 + AO356_22965 0.61 +1.0 5,127,169 + AO356_22965 0.61 -0.2 5,127,169 + AO356_22965 0.61 -1.6 5,127,169 + AO356_22965 0.61 +0.2 5,127,169 + AO356_22965 0.61 -0.2 5,127,169 + AO356_22965 0.61 +0.1 5,127,170 - AO356_22965 0.61 -0.4 5,127,328 + AO356_22965 0.78 +0.5 5,127,328 + AO356_22965 0.78 +0.4 5,127,329 - AO356_22965 0.78 +1.5 5,127,329 - AO356_22965 0.78 -0.7 5,127,419 + AO356_22965 0.88 -1.8 5,127,426 + AO356_22965 0.89 +0.0 5,127,427 - AO356_22965 0.89 +0.1
Or see this region's nucleotide sequence