Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22665 and AO356_22670 are separated by 33 nucleotides AO356_22670 and AO356_22675 are separated by 28 nucleotides AO356_22675 and AO356_22680 are separated by 15 nucleotides AO356_22680 and AO356_22685 are separated by 11 nucleotides
AO356_22665: AO356_22665 - chemotaxis protein, at 5,063,697 to 5,065,355
_22665
AO356_22670: AO356_22670 - chemotaxis protein CheA, at 5,065,389 to 5,067,491
_22670
AO356_22675: AO356_22675 - sulfate transporter, at 5,067,520 to 5,067,804
_22675
AO356_22680: AO356_22680 - chemotaxis protein CheY, at 5,067,820 to 5,068,188
_22680
AO356_22685: AO356_22685 - chemotaxis protein, at 5,068,200 to 5,069,417
_22685
Position (kb)
5065
5066
5067
5068 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5064.552 kb on - strand, within AO356_22665 at 5064.979 kb on + strand, within AO356_22665 at 5064.980 kb on - strand, within AO356_22665 at 5065.049 kb on - strand, within AO356_22665 at 5065.049 kb on - strand, within AO356_22665 at 5065.334 kb on + strand at 5065.334 kb on + strand at 5065.335 kb on - strand at 5065.335 kb on - strand at 5065.335 kb on - strand at 5065.335 kb on - strand at 5065.342 kb on + strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.343 kb on - strand at 5065.363 kb on + strand at 5065.363 kb on + strand at 5065.363 kb on + strand at 5065.363 kb on + strand at 5065.364 kb on - strand at 5065.364 kb on - strand at 5065.364 kb on - strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.382 kb on + strand at 5065.410 kb on + strand at 5065.410 kb on + strand at 5065.410 kb on + strand at 5065.411 kb on - strand at 5065.411 kb on - strand at 5065.411 kb on - strand at 5065.411 kb on - strand at 5065.468 kb on - strand at 5065.766 kb on + strand, within AO356_22670 at 5065.767 kb on - strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.798 kb on + strand, within AO356_22670 at 5065.799 kb on - strand, within AO356_22670 at 5066.017 kb on + strand, within AO356_22670 at 5066.018 kb on - strand, within AO356_22670 at 5066.018 kb on - strand, within AO356_22670 at 5066.150 kb on - strand, within AO356_22670 at 5066.150 kb on - strand, within AO356_22670 at 5066.214 kb on + strand, within AO356_22670 at 5066.215 kb on - strand, within AO356_22670 at 5066.215 kb on - strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.575 kb on + strand, within AO356_22670 at 5066.576 kb on - strand, within AO356_22670 at 5066.576 kb on - strand, within AO356_22670 at 5066.576 kb on - strand, within AO356_22670 at 5066.576 kb on - strand, within AO356_22670 at 5066.576 kb on - strand, within AO356_22670 at 5066.576 kb on - strand, within AO356_22670 at 5066.870 kb on - strand, within AO356_22670 at 5066.956 kb on + strand, within AO356_22670 at 5067.103 kb on + strand, within AO356_22670 at 5067.103 kb on + strand, within AO356_22670 at 5067.103 kb on + strand, within AO356_22670 at 5067.104 kb on - strand, within AO356_22670 at 5067.737 kb on + strand, within AO356_22675 at 5067.792 kb on - strand at 5067.968 kb on + strand, within AO356_22680 at 5067.969 kb on - strand, within AO356_22680 at 5067.969 kb on - strand, within AO356_22680 at 5068.175 kb on - strand at 5068.183 kb on - strand at 5068.201 kb on + strand at 5068.202 kb on - strand at 5068.212 kb on + strand at 5068.212 kb on + strand at 5068.213 kb on - strand at 5068.213 kb on - strand at 5068.213 kb on - strand at 5068.279 kb on + strand at 5068.279 kb on + strand at 5068.280 kb on - strand at 5068.280 kb on - strand at 5068.280 kb on - strand at 5068.377 kb on + strand, within AO356_22685 at 5068.377 kb on + strand, within AO356_22685 at 5068.377 kb on + strand, within AO356_22685 at 5068.377 kb on + strand, within AO356_22685 at 5068.377 kb on + strand, within AO356_22685 at 5068.377 kb on + strand, within AO356_22685 at 5068.377 kb on + strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685 at 5068.378 kb on - strand, within AO356_22685
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 5,064,552 - AO356_22665 0.52 -0.4 5,064,979 + AO356_22665 0.77 +0.7 5,064,980 - AO356_22665 0.77 +1.3 5,065,049 - AO356_22665 0.81 +0.9 5,065,049 - AO356_22665 0.81 +0.8 5,065,334 + -1.2 5,065,334 + -1.3 5,065,335 - +1.0 5,065,335 - +0.8 5,065,335 - -2.2 5,065,335 - -1.1 5,065,342 + +0.2 5,065,343 - +0.7 5,065,343 - -1.4 5,065,343 - -1.0 5,065,343 - -1.1 5,065,343 - +0.8 5,065,363 + -1.7 5,065,363 + +0.6 5,065,363 + -0.1 5,065,363 + +0.4 5,065,364 - +0.8 5,065,364 - -0.1 5,065,364 - -0.8 5,065,382 + +0.3 5,065,382 + +0.5 5,065,382 + -2.1 5,065,382 + +1.6 5,065,382 + +1.3 5,065,410 + -0.7 5,065,410 + -0.4 5,065,410 + -0.4 5,065,411 - +0.5 5,065,411 - -1.8 5,065,411 - +0.1 5,065,411 - -0.7 5,065,468 - -0.6 5,065,766 + AO356_22670 0.18 +0.8 5,065,767 - AO356_22670 0.18 +0.3 5,065,798 + AO356_22670 0.19 +0.6 5,065,798 + AO356_22670 0.19 -0.5 5,065,798 + AO356_22670 0.19 -1.0 5,065,798 + AO356_22670 0.19 -0.8 5,065,798 + AO356_22670 0.19 +0.3 5,065,798 + AO356_22670 0.19 -0.5 5,065,799 - AO356_22670 0.19 -0.7 5,066,017 + AO356_22670 0.30 -0.4 5,066,018 - AO356_22670 0.30 +2.1 5,066,018 - AO356_22670 0.30 +0.5 5,066,150 - AO356_22670 0.36 -0.5 5,066,150 - AO356_22670 0.36 +0.6 5,066,214 + AO356_22670 0.39 -0.0 5,066,215 - AO356_22670 0.39 -0.2 5,066,215 - AO356_22670 0.39 +0.6 5,066,575 + AO356_22670 0.56 -0.5 5,066,575 + AO356_22670 0.56 -0.5 5,066,575 + AO356_22670 0.56 +0.1 5,066,575 + AO356_22670 0.56 +0.2 5,066,575 + AO356_22670 0.56 +1.7 5,066,575 + AO356_22670 0.56 -0.8 5,066,575 + AO356_22670 0.56 +0.5 5,066,575 + AO356_22670 0.56 -0.2 5,066,575 + AO356_22670 0.56 +0.4 5,066,575 + AO356_22670 0.56 +0.2 5,066,575 + AO356_22670 0.56 -1.6 5,066,576 - AO356_22670 0.56 +0.3 5,066,576 - AO356_22670 0.56 -0.4 5,066,576 - AO356_22670 0.56 +0.9 5,066,576 - AO356_22670 0.56 -2.1 5,066,576 - AO356_22670 0.56 +0.1 5,066,576 - AO356_22670 0.56 -1.2 5,066,870 - AO356_22670 0.70 -0.8 5,066,956 + AO356_22670 0.75 -0.9 5,067,103 + AO356_22670 0.82 +0.6 5,067,103 + AO356_22670 0.82 -0.1 5,067,103 + AO356_22670 0.82 +1.0 5,067,104 - AO356_22670 0.82 +0.4 5,067,737 + AO356_22675 0.76 +0.5 5,067,792 - -0.4 5,067,968 + AO356_22680 0.40 -1.4 5,067,969 - AO356_22680 0.40 -2.1 5,067,969 - AO356_22680 0.40 -2.0 5,068,175 - -0.9 5,068,183 - -0.2 5,068,201 + -0.2 5,068,202 - -0.4 5,068,212 + +0.2 5,068,212 + +0.1 5,068,213 - +0.1 5,068,213 - -1.2 5,068,213 - -0.3 5,068,279 + +0.9 5,068,279 + +0.5 5,068,280 - -1.3 5,068,280 - +0.3 5,068,280 - +0.8 5,068,377 + AO356_22685 0.15 +0.4 5,068,377 + AO356_22685 0.15 -0.1 5,068,377 + AO356_22685 0.15 +1.5 5,068,377 + AO356_22685 0.15 +0.1 5,068,377 + AO356_22685 0.15 +0.1 5,068,377 + AO356_22685 0.15 -1.3 5,068,377 + AO356_22685 0.15 +1.8 5,068,378 - AO356_22685 0.15 +0.4 5,068,378 - AO356_22685 0.15 +0.4 5,068,378 - AO356_22685 0.15 +0.3 5,068,378 - AO356_22685 0.15 -0.6 5,068,378 - AO356_22685 0.15 -1.0 5,068,378 - AO356_22685 0.15 +1.6 5,068,378 - AO356_22685 0.15 +1.1 5,068,378 - AO356_22685 0.15 -0.0 5,068,378 - AO356_22685 0.15 -0.8
Or see this region's nucleotide sequence