Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22210 and AO356_22215 overlap by 4 nucleotides AO356_22215 and AO356_22220 overlap by 4 nucleotides AO356_22220 and AO356_22225 overlap by 1 nucleotides AO356_22225 and AO356_22230 overlap by 1 nucleotides AO356_22230 and AO356_22235 are separated by 267 nucleotides AO356_22235 and AO356_22240 are separated by 2 nucleotides
AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247
_22210
AO356_22215: AO356_22215 - sulfur relay protein TusE, at 4,973,244 to 4,973,579
_22215
AO356_22220: AO356_22220 - sulfur relay protein DsrH, at 4,973,576 to 4,973,869
_22220
AO356_22225: AO356_22225 - sulfur relay protein TusC, at 4,973,869 to 4,974,231
_22225
AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623
_22230
AO356_22235: AO356_22235 - DNA repair protein, at 4,974,891 to 4,975,226
_22235
AO356_22240: AO356_22240 - hypothetical protein, at 4,975,229 to 4,975,489
_22240
Position (kb)
4974
4975 Strain fitness (log2 ratio)
-1
0
1
2 at 4974.657 kb on - strand at 4974.700 kb on - strand at 4974.711 kb on + strand at 4974.711 kb on + strand at 4974.711 kb on + strand at 4974.712 kb on - strand at 4974.712 kb on - strand at 4974.725 kb on + strand at 4974.726 kb on - strand at 4974.753 kb on + strand at 4974.753 kb on + strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.925 kb on + strand, within AO356_22235 at 4974.926 kb on - strand, within AO356_22235 at 4974.926 kb on - strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.965 kb on + strand, within AO356_22235 at 4974.966 kb on - strand, within AO356_22235 at 4974.966 kb on - strand, within AO356_22235 at 4975.096 kb on + strand, within AO356_22235 at 4975.097 kb on - strand, within AO356_22235 at 4975.308 kb on + strand, within AO356_22240 at 4975.308 kb on + strand, within AO356_22240 at 4975.308 kb on + strand, within AO356_22240 at 4975.309 kb on - strand, within AO356_22240 at 4975.309 kb on - strand, within AO356_22240 at 4975.365 kb on + strand, within AO356_22240 at 4975.366 kb on - strand, within AO356_22240 at 4975.449 kb on + strand, within AO356_22240 at 4975.450 kb on - strand, within AO356_22240 at 4975.450 kb on - strand, within AO356_22240 at 4975.467 kb on + strand at 4975.468 kb on - strand at 4975.468 kb on - strand at 4975.468 kb on - strand at 4975.566 kb on + strand at 4975.597 kb on + strand at 4975.598 kb on - strand at 4975.598 kb on - strand at 4975.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 4,974,657 - -0.4 4,974,700 - -0.0 4,974,711 + +1.3 4,974,711 + +0.9 4,974,711 + +0.7 4,974,712 - -1.2 4,974,712 - +1.8 4,974,725 + +0.3 4,974,726 - -0.5 4,974,753 + -0.1 4,974,753 + -0.6 4,974,754 - +1.4 4,974,754 - -0.5 4,974,754 - +1.7 4,974,754 - +0.2 4,974,754 - -0.1 4,974,754 - -0.4 4,974,925 + AO356_22235 0.10 -0.3 4,974,926 - AO356_22235 0.10 -0.3 4,974,926 - AO356_22235 0.10 +0.2 4,974,965 + AO356_22235 0.22 -0.6 4,974,965 + AO356_22235 0.22 +0.5 4,974,965 + AO356_22235 0.22 -1.0 4,974,965 + AO356_22235 0.22 -0.8 4,974,965 + AO356_22235 0.22 -1.1 4,974,965 + AO356_22235 0.22 +0.7 4,974,966 - AO356_22235 0.22 +0.2 4,974,966 - AO356_22235 0.22 -0.4 4,975,096 + AO356_22235 0.61 -0.6 4,975,097 - AO356_22235 0.61 -0.7 4,975,308 + AO356_22240 0.30 +1.4 4,975,308 + AO356_22240 0.30 -0.1 4,975,308 + AO356_22240 0.30 -0.6 4,975,309 - AO356_22240 0.31 +0.1 4,975,309 - AO356_22240 0.31 +1.4 4,975,365 + AO356_22240 0.52 +0.2 4,975,366 - AO356_22240 0.52 +0.0 4,975,449 + AO356_22240 0.84 -0.7 4,975,450 - AO356_22240 0.85 -0.6 4,975,450 - AO356_22240 0.85 +1.9 4,975,467 + +0.3 4,975,468 - -0.5 4,975,468 - -0.8 4,975,468 - -1.1 4,975,566 + +1.2 4,975,597 + -0.5 4,975,598 - +1.2 4,975,598 - +0.8 4,975,598 - -1.0
Or see this region's nucleotide sequence