Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21825 and AO356_21830 are separated by 96 nucleotides AO356_21830 and AO356_21835 are separated by 347 nucleotides AO356_21835 and AO356_21840 are separated by 175 nucleotides
AO356_21825: AO356_21825 - histidine kinase, at 4,885,931 to 4,887,994
_21825
AO356_21830: AO356_21830 - hypothetical protein, at 4,888,091 to 4,888,372
_21830
AO356_21835: AO356_21835 - glyoxalase, at 4,888,720 to 4,889,103
_21835
AO356_21840: AO356_21840 - N-methylproline demethylase, at 4,889,279 to 4,891,315
_21840
Position (kb)
4888
4889 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4887.101 kb on + strand, within AO356_21825 at 4887.102 kb on - strand, within AO356_21825 at 4887.119 kb on + strand, within AO356_21825 at 4887.119 kb on + strand, within AO356_21825 at 4887.120 kb on - strand, within AO356_21825 at 4887.359 kb on + strand, within AO356_21825 at 4887.360 kb on - strand, within AO356_21825 at 4887.360 kb on - strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.560 kb on + strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.561 kb on - strand, within AO356_21825 at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.789 kb on + strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4887.790 kb on - strand at 4888.006 kb on + strand at 4888.006 kb on + strand at 4888.007 kb on - strand at 4888.370 kb on + strand at 4888.370 kb on + strand at 4888.616 kb on + strand at 4888.616 kb on + strand at 4888.722 kb on - strand at 4888.722 kb on - strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.739 kb on + strand at 4888.776 kb on - strand, within AO356_21835 at 4889.043 kb on - strand, within AO356_21835 at 4889.092 kb on - strand at 4889.119 kb on - strand at 4889.165 kb on + strand at 4889.310 kb on + strand at 4889.311 kb on - strand at 4889.311 kb on - strand at 4889.311 kb on - strand at 4889.314 kb on + strand at 4889.315 kb on - strand at 4889.326 kb on + strand at 4889.327 kb on - strand at 4889.327 kb on - strand at 4889.329 kb on + strand at 4889.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 4,887,101 + AO356_21825 0.57 +0.1 4,887,102 - AO356_21825 0.57 -0.7 4,887,119 + AO356_21825 0.58 +0.8 4,887,119 + AO356_21825 0.58 -1.3 4,887,120 - AO356_21825 0.58 +0.2 4,887,359 + AO356_21825 0.69 +0.0 4,887,360 - AO356_21825 0.69 +0.0 4,887,360 - AO356_21825 0.69 -0.0 4,887,560 + AO356_21825 0.79 -0.7 4,887,560 + AO356_21825 0.79 +1.8 4,887,560 + AO356_21825 0.79 -0.1 4,887,561 - AO356_21825 0.79 +0.8 4,887,561 - AO356_21825 0.79 -1.3 4,887,561 - AO356_21825 0.79 +0.2 4,887,561 - AO356_21825 0.79 +1.9 4,887,789 + -1.3 4,887,789 + -0.8 4,887,789 + +1.3 4,887,790 - +2.1 4,887,790 - +0.3 4,887,790 - -0.1 4,887,790 - +0.1 4,887,790 - +0.0 4,888,006 + -0.4 4,888,006 + +0.3 4,888,007 - +1.6 4,888,370 + -0.2 4,888,370 + -0.3 4,888,616 + +0.5 4,888,616 + -0.7 4,888,722 - -1.9 4,888,722 - +0.6 4,888,739 + +0.2 4,888,739 + +0.1 4,888,739 + +1.2 4,888,739 + -1.0 4,888,776 - AO356_21835 0.15 -0.3 4,889,043 - AO356_21835 0.84 -2.3 4,889,092 - +0.5 4,889,119 - +1.5 4,889,165 + +0.8 4,889,310 + -1.5 4,889,311 - -0.7 4,889,311 - -0.4 4,889,311 - +2.4 4,889,314 + -0.1 4,889,315 - -1.1 4,889,326 + -0.3 4,889,327 - -0.1 4,889,327 - -1.3 4,889,329 + +1.3 4,889,330 - -0.5
Or see this region's nucleotide sequence