Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21700 and AO356_21705 are separated by 242 nucleotides AO356_21705 and AO356_21710 are separated by 102 nucleotides AO356_21710 and AO356_21715 overlap by 4 nucleotides
AO356_21700: AO356_21700 - DNA topoisomerase III, at 4,855,345 to 4,857,291
_21700
AO356_21705: AO356_21705 - response regulator, at 4,857,534 to 4,857,941
_21705
AO356_21710: AO356_21710 - RNA polymerase subunit sigma, at 4,858,044 to 4,858,565
_21710
AO356_21715: AO356_21715 - iron dicitrate transport regulator FecR, at 4,858,562 to 4,859,521
_21715
Position (kb)
4857
4858 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4856.649 kb on - strand, within AO356_21700 at 4856.834 kb on + strand, within AO356_21700 at 4856.834 kb on + strand, within AO356_21700 at 4856.915 kb on - strand, within AO356_21700 at 4857.044 kb on + strand, within AO356_21700 at 4857.044 kb on + strand, within AO356_21700 at 4857.045 kb on - strand, within AO356_21700 at 4857.045 kb on - strand, within AO356_21700 at 4857.281 kb on + strand at 4857.281 kb on + strand at 4857.281 kb on + strand at 4857.281 kb on + strand at 4857.282 kb on - strand at 4857.282 kb on - strand at 4857.282 kb on - strand at 4857.282 kb on - strand at 4857.291 kb on + strand at 4857.291 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.326 kb on + strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.327 kb on - strand at 4857.367 kb on - strand at 4857.374 kb on + strand at 4857.475 kb on + strand at 4857.476 kb on - strand at 4857.476 kb on - strand at 4857.509 kb on + strand at 4857.510 kb on - strand at 4857.569 kb on + strand at 4857.569 kb on + strand at 4857.605 kb on + strand, within AO356_21705 at 4857.606 kb on - strand, within AO356_21705 at 4857.606 kb on - strand, within AO356_21705 at 4857.734 kb on + strand, within AO356_21705 at 4857.943 kb on + strand at 4857.944 kb on - strand at 4858.089 kb on + strand at 4858.090 kb on - strand at 4858.090 kb on - strand at 4858.090 kb on - strand at 4858.090 kb on - strand at 4858.172 kb on + strand, within AO356_21710 at 4858.173 kb on - strand, within AO356_21710 at 4858.230 kb on + strand, within AO356_21710 at 4858.296 kb on + strand, within AO356_21710 at 4858.456 kb on - strand, within AO356_21710 at 4858.456 kb on - strand, within AO356_21710 at 4858.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 4,856,649 - AO356_21700 0.67 -0.3 4,856,834 + AO356_21700 0.76 +0.2 4,856,834 + AO356_21700 0.76 -0.7 4,856,915 - AO356_21700 0.81 -0.7 4,857,044 + AO356_21700 0.87 +1.3 4,857,044 + AO356_21700 0.87 +0.4 4,857,045 - AO356_21700 0.87 +0.1 4,857,045 - AO356_21700 0.87 -1.9 4,857,281 + +0.1 4,857,281 + -0.8 4,857,281 + -0.4 4,857,281 + -0.5 4,857,282 - +0.6 4,857,282 - +1.1 4,857,282 - +0.2 4,857,282 - +0.1 4,857,291 + +1.1 4,857,291 + -0.7 4,857,326 + -0.6 4,857,326 + +0.1 4,857,326 + -0.3 4,857,326 + +0.3 4,857,326 + -0.0 4,857,326 + +0.2 4,857,326 + +0.6 4,857,326 + +0.3 4,857,326 + -0.7 4,857,327 - +0.6 4,857,327 - +0.8 4,857,327 - -0.0 4,857,327 - -1.9 4,857,327 - +0.1 4,857,327 - +1.1 4,857,327 - +0.1 4,857,327 - +0.5 4,857,367 - -0.5 4,857,374 + +0.0 4,857,475 + -1.2 4,857,476 - +0.8 4,857,476 - -1.3 4,857,509 + -0.2 4,857,510 - +0.1 4,857,569 + -0.2 4,857,569 + +1.3 4,857,605 + AO356_21705 0.17 -0.4 4,857,606 - AO356_21705 0.18 +1.2 4,857,606 - AO356_21705 0.18 +1.6 4,857,734 + AO356_21705 0.49 +0.3 4,857,943 + -0.5 4,857,944 - +0.0 4,858,089 + -1.6 4,858,090 - -0.9 4,858,090 - +2.0 4,858,090 - +0.8 4,858,090 - -0.1 4,858,172 + AO356_21710 0.25 +0.6 4,858,173 - AO356_21710 0.25 -0.6 4,858,230 + AO356_21710 0.36 -0.8 4,858,296 + AO356_21710 0.48 -0.3 4,858,456 - AO356_21710 0.79 +0.2 4,858,456 - AO356_21710 0.79 -2.1 4,858,614 - +0.9
Or see this region's nucleotide sequence