Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21580 and AO356_21585 overlap by 4 nucleotides AO356_21585 and AO356_21590 are separated by 53 nucleotides AO356_21590 and AO356_21595 are separated by 232 nucleotides
AO356_21580: AO356_21580 - branched-chain amino acid ABC transporter permease, at 4,832,165 to 4,832,875
_21580
AO356_21585: AO356_21585 - branched-chain amino acid transporter, at 4,832,872 to 4,833,180
_21585
AO356_21590: AO356_21590 - hypothetical protein, at 4,833,234 to 4,833,440
_21590
AO356_21595: AO356_21595 - MFS transporter, at 4,833,673 to 4,834,884
_21595
Position (kb)
4833
4834 Strain fitness (log2 ratio)
-2
-1
0
1 at 4832.260 kb on - strand, within AO356_21580 at 4832.260 kb on - strand, within AO356_21580 at 4832.308 kb on + strand, within AO356_21580 at 4832.308 kb on + strand, within AO356_21580 at 4832.308 kb on + strand, within AO356_21580 at 4832.309 kb on - strand, within AO356_21580 at 4832.460 kb on - strand, within AO356_21580 at 4832.495 kb on + strand, within AO356_21580 at 4832.580 kb on + strand, within AO356_21580 at 4832.786 kb on + strand, within AO356_21580 at 4832.787 kb on - strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.792 kb on + strand, within AO356_21580 at 4832.793 kb on - strand, within AO356_21580 at 4832.793 kb on - strand, within AO356_21580 at 4832.912 kb on + strand, within AO356_21585 at 4832.986 kb on + strand, within AO356_21585 at 4833.038 kb on + strand, within AO356_21585 at 4833.038 kb on + strand, within AO356_21585 at 4833.039 kb on - strand, within AO356_21585 at 4833.149 kb on + strand, within AO356_21585 at 4833.149 kb on + strand, within AO356_21585 at 4833.149 kb on + strand, within AO356_21585 at 4833.150 kb on - strand at 4833.150 kb on - strand at 4833.390 kb on + strand, within AO356_21590 at 4833.391 kb on - strand, within AO356_21590 at 4833.391 kb on - strand, within AO356_21590 at 4833.443 kb on + strand at 4833.443 kb on + strand at 4833.443 kb on + strand at 4833.443 kb on + strand at 4833.444 kb on - strand at 4833.495 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.636 kb on + strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.637 kb on - strand at 4833.647 kb on + strand at 4833.648 kb on - strand at 4833.648 kb on - strand at 4833.650 kb on + strand at 4833.651 kb on - strand at 4833.923 kb on + strand, within AO356_21595 at 4833.924 kb on - strand, within AO356_21595 at 4833.924 kb on - strand, within AO356_21595 at 4833.924 kb on - strand, within AO356_21595 at 4833.974 kb on + strand, within AO356_21595 at 4833.975 kb on - strand, within AO356_21595 at 4833.975 kb on - strand, within AO356_21595 at 4834.021 kb on - strand, within AO356_21595 at 4834.031 kb on + strand, within AO356_21595 at 4834.031 kb on + strand, within AO356_21595 at 4834.031 kb on + strand, within AO356_21595 at 4834.032 kb on - strand, within AO356_21595 at 4834.032 kb on - strand, within AO356_21595 at 4834.032 kb on - strand, within AO356_21595 at 4834.130 kb on + strand, within AO356_21595 at 4834.130 kb on + strand, within AO356_21595 at 4834.130 kb on + strand, within AO356_21595 at 4834.131 kb on - strand, within AO356_21595 at 4834.151 kb on + strand, within AO356_21595 at 4834.151 kb on + strand, within AO356_21595 at 4834.151 kb on + strand, within AO356_21595
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 4,832,260 - AO356_21580 0.13 +0.7 4,832,260 - AO356_21580 0.13 -0.2 4,832,308 + AO356_21580 0.20 -0.1 4,832,308 + AO356_21580 0.20 +1.2 4,832,308 + AO356_21580 0.20 +0.5 4,832,309 - AO356_21580 0.20 -0.1 4,832,460 - AO356_21580 0.41 +0.1 4,832,495 + AO356_21580 0.46 +0.3 4,832,580 + AO356_21580 0.58 +1.2 4,832,786 + AO356_21580 0.87 -0.8 4,832,787 - AO356_21580 0.87 +1.6 4,832,792 + AO356_21580 0.88 +0.1 4,832,792 + AO356_21580 0.88 +1.0 4,832,792 + AO356_21580 0.88 +0.7 4,832,792 + AO356_21580 0.88 +0.7 4,832,792 + AO356_21580 0.88 +0.4 4,832,793 - AO356_21580 0.88 +1.1 4,832,793 - AO356_21580 0.88 -0.0 4,832,912 + AO356_21585 0.13 +0.9 4,832,986 + AO356_21585 0.37 -1.2 4,833,038 + AO356_21585 0.54 -0.0 4,833,038 + AO356_21585 0.54 +0.7 4,833,039 - AO356_21585 0.54 +0.5 4,833,149 + AO356_21585 0.90 +0.8 4,833,149 + AO356_21585 0.90 +1.5 4,833,149 + AO356_21585 0.90 -0.2 4,833,150 - -0.9 4,833,150 - +0.1 4,833,390 + AO356_21590 0.75 +0.5 4,833,391 - AO356_21590 0.76 +0.4 4,833,391 - AO356_21590 0.76 +1.2 4,833,443 + +1.1 4,833,443 + -0.1 4,833,443 + +0.9 4,833,443 + +1.5 4,833,444 - +0.3 4,833,495 + +1.5 4,833,636 + +0.1 4,833,636 + -0.0 4,833,636 + +0.5 4,833,636 + +0.1 4,833,636 + -1.3 4,833,637 - -0.4 4,833,637 - -0.6 4,833,637 - +0.4 4,833,637 - +0.7 4,833,637 - +0.5 4,833,637 - +0.4 4,833,637 - -1.5 4,833,647 + +0.1 4,833,648 - +0.1 4,833,648 - -0.6 4,833,650 + -0.0 4,833,651 - -1.1 4,833,923 + AO356_21595 0.21 -0.0 4,833,924 - AO356_21595 0.21 +0.1 4,833,924 - AO356_21595 0.21 -0.0 4,833,924 - AO356_21595 0.21 -0.4 4,833,974 + AO356_21595 0.25 -0.3 4,833,975 - AO356_21595 0.25 -0.2 4,833,975 - AO356_21595 0.25 -0.5 4,834,021 - AO356_21595 0.29 +0.1 4,834,031 + AO356_21595 0.30 +0.2 4,834,031 + AO356_21595 0.30 -0.2 4,834,031 + AO356_21595 0.30 +0.3 4,834,032 - AO356_21595 0.30 +1.1 4,834,032 - AO356_21595 0.30 +0.8 4,834,032 - AO356_21595 0.30 +0.6 4,834,130 + AO356_21595 0.38 +0.7 4,834,130 + AO356_21595 0.38 +0.1 4,834,130 + AO356_21595 0.38 +0.3 4,834,131 - AO356_21595 0.38 -0.2 4,834,151 + AO356_21595 0.39 +0.6 4,834,151 + AO356_21595 0.39 -2.3 4,834,151 + AO356_21595 0.39 -0.6
Or see this region's nucleotide sequence