Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20615 and AO356_20620 are separated by 19 nucleotides AO356_20620 and AO356_20625 are separated by 138 nucleotides AO356_20625 and AO356_20630 overlap by 1 nucleotides
AO356_20615: AO356_20615 - oxidoreductase, at 4,595,771 to 4,596,778
_20615
AO356_20620: AO356_20620 - phage capsid protein, at 4,596,798 to 4,597,628
_20620
AO356_20625: AO356_20625 - terminase, at 4,597,767 to 4,599,521
_20625
AO356_20630: AO356_20630 - Presumed portal vertex protein, at 4,599,521 to 4,600,522
_20630
Position (kb)
4597
4598
4599
4600 Strain fitness (log2 ratio)
-1
0
1
2 at 4597.015 kb on - strand, within AO356_20620 at 4597.273 kb on + strand, within AO356_20620 at 4597.273 kb on + strand, within AO356_20620 at 4597.274 kb on - strand, within AO356_20620 at 4597.274 kb on - strand, within AO356_20620 at 4597.274 kb on - strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.321 kb on + strand, within AO356_20620 at 4597.322 kb on - strand, within AO356_20620 at 4597.364 kb on + strand, within AO356_20620 at 4597.364 kb on + strand, within AO356_20620 at 4597.364 kb on + strand, within AO356_20620 at 4597.428 kb on + strand, within AO356_20620 at 4597.437 kb on + strand, within AO356_20620 at 4597.437 kb on + strand, within AO356_20620 at 4597.438 kb on - strand, within AO356_20620 at 4597.478 kb on + strand, within AO356_20620 at 4597.511 kb on - strand, within AO356_20620 at 4597.718 kb on - strand at 4597.749 kb on - strand at 4597.818 kb on + strand at 4597.982 kb on + strand, within AO356_20625 at 4597.983 kb on - strand, within AO356_20625 at 4598.278 kb on - strand, within AO356_20625 at 4598.358 kb on + strand, within AO356_20625 at 4598.359 kb on - strand, within AO356_20625 at 4598.373 kb on + strand, within AO356_20625 at 4598.374 kb on - strand, within AO356_20625 at 4598.374 kb on - strand, within AO356_20625 at 4598.431 kb on + strand, within AO356_20625 at 4598.431 kb on + strand, within AO356_20625 at 4598.431 kb on + strand, within AO356_20625 at 4598.432 kb on - strand, within AO356_20625 at 4598.432 kb on - strand, within AO356_20625 at 4598.491 kb on - strand, within AO356_20625 at 4598.491 kb on - strand, within AO356_20625 at 4598.595 kb on + strand, within AO356_20625 at 4598.595 kb on + strand, within AO356_20625 at 4598.632 kb on - strand, within AO356_20625 at 4599.516 kb on + strand at 4600.142 kb on + strand, within AO356_20630 at 4600.275 kb on + strand, within AO356_20630 at 4600.275 kb on + strand, within AO356_20630 at 4600.276 kb on - strand, within AO356_20630 at 4600.433 kb on - strand at 4600.433 kb on - strand at 4600.433 kb on - strand at 4600.434 kb on + strand at 4600.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 4,597,015 - AO356_20620 0.26 -0.0 4,597,273 + AO356_20620 0.57 +1.0 4,597,273 + AO356_20620 0.57 -1.0 4,597,274 - AO356_20620 0.57 +0.9 4,597,274 - AO356_20620 0.57 -1.5 4,597,274 - AO356_20620 0.57 +1.3 4,597,321 + AO356_20620 0.63 -0.8 4,597,321 + AO356_20620 0.63 -0.5 4,597,321 + AO356_20620 0.63 +1.0 4,597,321 + AO356_20620 0.63 +0.9 4,597,321 + AO356_20620 0.63 +0.4 4,597,321 + AO356_20620 0.63 +0.7 4,597,322 - AO356_20620 0.63 +1.9 4,597,364 + AO356_20620 0.68 +1.5 4,597,364 + AO356_20620 0.68 -1.1 4,597,364 + AO356_20620 0.68 +1.7 4,597,428 + AO356_20620 0.76 -0.1 4,597,437 + AO356_20620 0.77 +0.8 4,597,437 + AO356_20620 0.77 -1.1 4,597,438 - AO356_20620 0.77 +0.4 4,597,478 + AO356_20620 0.82 +0.2 4,597,511 - AO356_20620 0.86 -0.5 4,597,718 - -1.3 4,597,749 - -0.8 4,597,818 + -1.4 4,597,982 + AO356_20625 0.12 -0.4 4,597,983 - AO356_20625 0.12 +0.8 4,598,278 - AO356_20625 0.29 +0.3 4,598,358 + AO356_20625 0.34 -0.4 4,598,359 - AO356_20625 0.34 +0.4 4,598,373 + AO356_20625 0.35 +1.4 4,598,374 - AO356_20625 0.35 +0.6 4,598,374 - AO356_20625 0.35 -0.5 4,598,431 + AO356_20625 0.38 +0.1 4,598,431 + AO356_20625 0.38 -0.1 4,598,431 + AO356_20625 0.38 +0.3 4,598,432 - AO356_20625 0.38 +0.0 4,598,432 - AO356_20625 0.38 -0.2 4,598,491 - AO356_20625 0.41 +1.9 4,598,491 - AO356_20625 0.41 -0.7 4,598,595 + AO356_20625 0.47 -0.1 4,598,595 + AO356_20625 0.47 -1.0 4,598,632 - AO356_20625 0.49 -1.0 4,599,516 + +0.5 4,600,142 + AO356_20630 0.62 +0.0 4,600,275 + AO356_20630 0.75 -1.0 4,600,275 + AO356_20630 0.75 +0.3 4,600,276 - AO356_20630 0.75 -1.4 4,600,433 - -1.0 4,600,433 - +0.9 4,600,433 - -1.0 4,600,434 + -1.3 4,600,435 - -0.8
Or see this region's nucleotide sequence