Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19950

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19935 and AO356_19940 are separated by 156 nucleotidesAO356_19940 and AO356_19945 are separated by 26 nucleotidesAO356_19945 and AO356_19950 are separated by 2 nucleotidesAO356_19950 and AO356_19955 are separated by 15 nucleotidesAO356_19955 and AO356_19960 are separated by 71 nucleotides AO356_19935: AO356_19935 - pilus assembly protein PilA, at 4,465,898 to 4,466,092 _19935 AO356_19940: AO356_19940 - pilus assembly protein PilA, at 4,466,249 to 4,466,443 _19940 AO356_19945: AO356_19945 - hypothetical protein, at 4,466,470 to 4,467,000 _19945 AO356_19950: AO356_19950 - AAA family ATPase, at 4,467,003 to 4,468,331 _19950 AO356_19955: AO356_19955 - Flp pilus assembly protein CpaB, at 4,468,347 to 4,469,162 _19955 AO356_19960: AO356_19960 - pilus assembly protein, at 4,469,234 to 4,470,550 _19960 Position (kb) 4467 4468 4469Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4466.153 kb on + strandat 4466.153 kb on + strandat 4466.154 kb on - strandat 4466.154 kb on - strandat 4466.154 kb on - strandat 4466.164 kb on + strandat 4466.221 kb on + strandat 4466.222 kb on - strandat 4466.222 kb on - strandat 4466.265 kb on + strandat 4466.265 kb on + strandat 4466.266 kb on - strandat 4466.266 kb on - strandat 4466.266 kb on - strandat 4466.321 kb on + strand, within AO356_19940at 4466.321 kb on + strand, within AO356_19940at 4466.426 kb on - strandat 4466.508 kb on - strandat 4466.553 kb on + strand, within AO356_19945at 4466.608 kb on + strand, within AO356_19945at 4466.608 kb on + strand, within AO356_19945at 4466.608 kb on + strand, within AO356_19945at 4466.608 kb on + strand, within AO356_19945at 4466.609 kb on - strand, within AO356_19945at 4466.609 kb on - strand, within AO356_19945at 4466.609 kb on - strand, within AO356_19945at 4466.609 kb on - strand, within AO356_19945at 4466.683 kb on + strand, within AO356_19945at 4466.683 kb on + strand, within AO356_19945at 4466.684 kb on - strand, within AO356_19945at 4466.684 kb on - strand, within AO356_19945at 4466.684 kb on - strand, within AO356_19945at 4466.881 kb on + strand, within AO356_19945at 4466.998 kb on + strandat 4466.998 kb on + strandat 4466.999 kb on - strandat 4466.999 kb on - strandat 4467.030 kb on + strandat 4467.052 kb on + strandat 4467.052 kb on + strandat 4467.052 kb on + strandat 4467.052 kb on + strandat 4467.053 kb on - strandat 4467.053 kb on - strandat 4467.053 kb on - strandat 4467.345 kb on + strand, within AO356_19950at 4467.345 kb on + strand, within AO356_19950at 4467.346 kb on - strand, within AO356_19950at 4467.346 kb on - strand, within AO356_19950at 4467.374 kb on + strand, within AO356_19950at 4467.374 kb on + strand, within AO356_19950at 4467.374 kb on + strand, within AO356_19950at 4467.374 kb on + strand, within AO356_19950at 4467.375 kb on - strand, within AO356_19950at 4467.375 kb on - strand, within AO356_19950at 4467.375 kb on - strand, within AO356_19950at 4467.375 kb on - strand, within AO356_19950at 4467.379 kb on - strand, within AO356_19950at 4467.379 kb on - strand, within AO356_19950at 4467.525 kb on + strand, within AO356_19950at 4467.525 kb on + strand, within AO356_19950at 4467.525 kb on + strand, within AO356_19950at 4467.525 kb on + strand, within AO356_19950at 4467.525 kb on + strand, within AO356_19950at 4467.526 kb on - strand, within AO356_19950at 4467.526 kb on - strand, within AO356_19950at 4467.545 kb on + strand, within AO356_19950at 4467.545 kb on + strand, within AO356_19950at 4467.552 kb on + strand, within AO356_19950at 4467.552 kb on + strand, within AO356_19950at 4467.553 kb on - strand, within AO356_19950at 4467.553 kb on - strand, within AO356_19950at 4467.553 kb on - strand, within AO356_19950at 4467.553 kb on - strand, within AO356_19950at 4467.639 kb on + strand, within AO356_19950at 4467.639 kb on + strand, within AO356_19950at 4467.639 kb on + strand, within AO356_19950at 4467.810 kb on + strand, within AO356_19950at 4468.054 kb on - strand, within AO356_19950at 4468.134 kb on + strand, within AO356_19950at 4468.135 kb on - strand, within AO356_19950at 4468.155 kb on + strand, within AO356_19950at 4468.155 kb on + strand, within AO356_19950at 4468.156 kb on - strand, within AO356_19950at 4468.173 kb on + strand, within AO356_19950at 4468.173 kb on + strand, within AO356_19950at 4468.173 kb on + strand, within AO356_19950at 4468.173 kb on + strand, within AO356_19950at 4468.174 kb on - strand, within AO356_19950at 4468.174 kb on - strand, within AO356_19950at 4468.174 kb on - strand, within AO356_19950at 4468.174 kb on - strand, within AO356_19950at 4468.174 kb on - strand, within AO356_19950at 4468.305 kb on + strandat 4468.305 kb on + strandat 4468.305 kb on + strandat 4468.305 kb on + strandat 4468.305 kb on + strandat 4468.305 kb on + strandat 4468.306 kb on - strandat 4468.306 kb on - strandat 4468.306 kb on - strandat 4468.306 kb on - strandat 4468.306 kb on - strandat 4468.306 kb on - strandat 4468.306 kb on - strandat 4468.358 kb on + strandat 4468.358 kb on + strandat 4468.359 kb on - strandat 4468.774 kb on + strand, within AO356_19955at 4468.774 kb on + strand, within AO356_19955at 4468.774 kb on + strand, within AO356_19955at 4468.774 kb on + strand, within AO356_19955at 4468.775 kb on - strand, within AO356_19955at 4468.805 kb on + strand, within AO356_19955at 4468.805 kb on + strand, within AO356_19955at 4469.220 kb on + strandat 4469.220 kb on + strandat 4469.220 kb on + strandat 4469.221 kb on - strandat 4469.278 kb on - strandat 4469.278 kb on - strandat 4469.278 kb on - strandat 4469.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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4,466,153 + +1.5
4,466,153 + +0.3
4,466,154 - +0.8
4,466,154 - +0.0
4,466,154 - -0.4
4,466,164 + +0.3
4,466,221 + +0.1
4,466,222 - -0.3
4,466,222 - -1.2
4,466,265 + +0.7
4,466,265 + -0.2
4,466,266 - -1.1
4,466,266 - +0.8
4,466,266 - -0.6
4,466,321 + AO356_19940 0.37 -1.4
4,466,321 + AO356_19940 0.37 +1.2
4,466,426 - -1.4
4,466,508 - +0.8
4,466,553 + AO356_19945 0.16 +0.4
4,466,608 + AO356_19945 0.26 -2.0
4,466,608 + AO356_19945 0.26 -0.1
4,466,608 + AO356_19945 0.26 -0.1
4,466,608 + AO356_19945 0.26 +0.4
4,466,609 - AO356_19945 0.26 +0.4
4,466,609 - AO356_19945 0.26 -1.3
4,466,609 - AO356_19945 0.26 -0.3
4,466,609 - AO356_19945 0.26 +0.1
4,466,683 + AO356_19945 0.40 -1.2
4,466,683 + AO356_19945 0.40 +0.5
4,466,684 - AO356_19945 0.40 -0.2
4,466,684 - AO356_19945 0.40 -0.4
4,466,684 - AO356_19945 0.40 +0.3
4,466,881 + AO356_19945 0.77 -0.7
4,466,998 + +1.8
4,466,998 + -0.6
4,466,999 - -0.2
4,466,999 - +1.7
4,467,030 + +0.3
4,467,052 + +0.6
4,467,052 + +0.6
4,467,052 + +1.9
4,467,052 + -1.2
4,467,053 - +0.8
4,467,053 - -2.0
4,467,053 - +3.3
4,467,345 + AO356_19950 0.26 +0.1
4,467,345 + AO356_19950 0.26 -0.2
4,467,346 - AO356_19950 0.26 +0.4
4,467,346 - AO356_19950 0.26 +3.1
4,467,374 + AO356_19950 0.28 +0.1
4,467,374 + AO356_19950 0.28 +0.2
4,467,374 + AO356_19950 0.28 -0.8
4,467,374 + AO356_19950 0.28 +0.8
4,467,375 - AO356_19950 0.28 -0.8
4,467,375 - AO356_19950 0.28 -0.9
4,467,375 - AO356_19950 0.28 -0.1
4,467,375 - AO356_19950 0.28 -0.1
4,467,379 - AO356_19950 0.28 +0.8
4,467,379 - AO356_19950 0.28 +0.4
4,467,525 + AO356_19950 0.39 +0.3
4,467,525 + AO356_19950 0.39 -0.3
4,467,525 + AO356_19950 0.39 +1.1
4,467,525 + AO356_19950 0.39 +0.6
4,467,525 + AO356_19950 0.39 -0.0
4,467,526 - AO356_19950 0.39 -1.0
4,467,526 - AO356_19950 0.39 +1.1
4,467,545 + AO356_19950 0.41 -0.2
4,467,545 + AO356_19950 0.41 -0.7
4,467,552 + AO356_19950 0.41 +0.3
4,467,552 + AO356_19950 0.41 -0.6
4,467,553 - AO356_19950 0.41 +0.6
4,467,553 - AO356_19950 0.41 -0.3
4,467,553 - AO356_19950 0.41 +1.8
4,467,553 - AO356_19950 0.41 +1.0
4,467,639 + AO356_19950 0.48 -0.0
4,467,639 + AO356_19950 0.48 +0.1
4,467,639 + AO356_19950 0.48 -1.7
4,467,810 + AO356_19950 0.61 -0.3
4,468,054 - AO356_19950 0.79 +0.1
4,468,134 + AO356_19950 0.85 -0.6
4,468,135 - AO356_19950 0.85 -0.6
4,468,155 + AO356_19950 0.87 -0.5
4,468,155 + AO356_19950 0.87 +0.1
4,468,156 - AO356_19950 0.87 +0.1
4,468,173 + AO356_19950 0.88 -1.4
4,468,173 + AO356_19950 0.88 -0.0
4,468,173 + AO356_19950 0.88 +0.3
4,468,173 + AO356_19950 0.88 -2.0
4,468,174 - AO356_19950 0.88 -2.5
4,468,174 - AO356_19950 0.88 -1.4
4,468,174 - AO356_19950 0.88 -0.3
4,468,174 - AO356_19950 0.88 -0.2
4,468,174 - AO356_19950 0.88 +0.8
4,468,305 + +0.3
4,468,305 + +4.7
4,468,305 + -0.1
4,468,305 + -0.4
4,468,305 + +1.3
4,468,305 + -0.0
4,468,306 - +0.6
4,468,306 - +0.3
4,468,306 - +0.8
4,468,306 - -0.1
4,468,306 - +1.9
4,468,306 - +0.4
4,468,306 - +0.2
4,468,358 + -1.9
4,468,358 + -1.2
4,468,359 - -0.9
4,468,774 + AO356_19955 0.52 +0.6
4,468,774 + AO356_19955 0.52 +1.0
4,468,774 + AO356_19955 0.52 +1.0
4,468,774 + AO356_19955 0.52 +0.9
4,468,775 - AO356_19955 0.52 -0.4
4,468,805 + AO356_19955 0.56 -0.2
4,468,805 + AO356_19955 0.56 +0.3
4,469,220 + +0.9
4,469,220 + +0.7
4,469,220 + -0.7
4,469,221 - +0.1
4,469,278 - +0.6
4,469,278 - -0.3
4,469,278 - +0.4
4,469,278 - +0.3

Or see this region's nucleotide sequence