Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18505

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18495 and AO356_18500 are separated by 13 nucleotidesAO356_18500 and AO356_18505 are separated by 0 nucleotidesAO356_18505 and AO356_18510 are separated by 11 nucleotides AO356_18495: AO356_18495 - phosphoesterase, at 4,161,765 to 4,162,628 _18495 AO356_18500: AO356_18500 - hypothetical protein, at 4,162,642 to 4,163,271 _18500 AO356_18505: AO356_18505 - chromosome segregation protein ScpA, at 4,163,272 to 4,164,102 _18505 AO356_18510: AO356_18510 - segregation and condensation protein B, at 4,164,114 to 4,165,064 _18510 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4162.356 kb on + strand, within AO356_18495at 4162.357 kb on - strand, within AO356_18495at 4162.357 kb on - strand, within AO356_18495at 4162.398 kb on + strand, within AO356_18495at 4162.398 kb on + strand, within AO356_18495at 4162.399 kb on - strand, within AO356_18495at 4162.399 kb on - strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.400 kb on + strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.401 kb on - strand, within AO356_18495at 4162.634 kb on + strandat 4162.634 kb on + strandat 4162.634 kb on + strandat 4162.635 kb on - strandat 4162.635 kb on - strandat 4162.635 kb on - strandat 4162.635 kb on - strandat 4162.735 kb on + strand, within AO356_18500at 4162.735 kb on + strand, within AO356_18500at 4162.753 kb on + strand, within AO356_18500at 4162.753 kb on + strand, within AO356_18500at 4162.753 kb on + strand, within AO356_18500at 4162.754 kb on - strand, within AO356_18500at 4162.754 kb on - strand, within AO356_18500at 4162.930 kb on + strand, within AO356_18500at 4162.930 kb on + strand, within AO356_18500at 4162.930 kb on + strand, within AO356_18500at 4162.931 kb on - strand, within AO356_18500at 4163.114 kb on - strand, within AO356_18500at 4163.129 kb on + strand, within AO356_18500at 4163.129 kb on + strand, within AO356_18500at 4163.130 kb on - strand, within AO356_18500at 4163.350 kb on + strandat 4163.351 kb on - strandat 4163.351 kb on - strandat 4163.386 kb on + strand, within AO356_18505at 4163.386 kb on + strand, within AO356_18505at 4163.386 kb on + strand, within AO356_18505at 4163.387 kb on - strand, within AO356_18505at 4163.387 kb on - strand, within AO356_18505at 4163.387 kb on - strand, within AO356_18505at 4163.453 kb on - strand, within AO356_18505at 4163.479 kb on - strand, within AO356_18505at 4163.515 kb on + strand, within AO356_18505at 4163.515 kb on + strand, within AO356_18505at 4163.515 kb on + strand, within AO356_18505at 4163.516 kb on - strand, within AO356_18505at 4163.524 kb on + strand, within AO356_18505at 4163.547 kb on - strand, within AO356_18505at 4163.570 kb on - strand, within AO356_18505at 4163.570 kb on - strand, within AO356_18505at 4163.570 kb on - strand, within AO356_18505at 4163.689 kb on + strand, within AO356_18505at 4163.689 kb on + strand, within AO356_18505at 4163.690 kb on - strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.807 kb on + strand, within AO356_18505at 4163.808 kb on - strand, within AO356_18505at 4163.859 kb on + strand, within AO356_18505at 4163.860 kb on - strand, within AO356_18505at 4164.388 kb on - strand, within AO356_18510at 4164.388 kb on - strand, within AO356_18510at 4164.463 kb on + strand, within AO356_18510at 4164.463 kb on + strand, within AO356_18510at 4164.464 kb on - strand, within AO356_18510at 4164.464 kb on - strand, within AO356_18510at 4164.488 kb on + strand, within AO356_18510at 4165.065 kb on + strandat 4165.065 kb on + strandat 4165.066 kb on - strandat 4165.066 kb on - strandat 4165.066 kb on - strandat 4165.066 kb on - strandat 4165.066 kb on - strandat 4165.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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4,162,356 + AO356_18495 0.68 -2.0
4,162,357 - AO356_18495 0.69 +0.2
4,162,357 - AO356_18495 0.69 -1.1
4,162,398 + AO356_18495 0.73 -0.6
4,162,398 + AO356_18495 0.73 +1.0
4,162,399 - AO356_18495 0.73 -1.0
4,162,399 - AO356_18495 0.73 +0.6
4,162,400 + AO356_18495 0.73 -1.4
4,162,400 + AO356_18495 0.73 -1.0
4,162,400 + AO356_18495 0.73 -0.3
4,162,400 + AO356_18495 0.73 -1.4
4,162,401 - AO356_18495 0.74 -0.1
4,162,401 - AO356_18495 0.74 +0.0
4,162,401 - AO356_18495 0.74 -1.0
4,162,401 - AO356_18495 0.74 -0.8
4,162,401 - AO356_18495 0.74 +0.2
4,162,401 - AO356_18495 0.74 -1.0
4,162,634 + -0.8
4,162,634 + -0.1
4,162,634 + +0.7
4,162,635 - +1.3
4,162,635 - +1.3
4,162,635 - +0.9
4,162,635 - +0.0
4,162,735 + AO356_18500 0.15 -0.9
4,162,735 + AO356_18500 0.15 -0.2
4,162,753 + AO356_18500 0.18 +0.2
4,162,753 + AO356_18500 0.18 +0.7
4,162,753 + AO356_18500 0.18 -1.4
4,162,754 - AO356_18500 0.18 -1.8
4,162,754 - AO356_18500 0.18 -0.6
4,162,930 + AO356_18500 0.46 +1.6
4,162,930 + AO356_18500 0.46 -0.0
4,162,930 + AO356_18500 0.46 +0.7
4,162,931 - AO356_18500 0.46 +0.8
4,163,114 - AO356_18500 0.75 +0.0
4,163,129 + AO356_18500 0.77 +0.2
4,163,129 + AO356_18500 0.77 -1.0
4,163,130 - AO356_18500 0.77 +0.7
4,163,350 + +0.7
4,163,351 - -0.5
4,163,351 - +0.3
4,163,386 + AO356_18505 0.14 +2.1
4,163,386 + AO356_18505 0.14 +0.9
4,163,386 + AO356_18505 0.14 +1.3
4,163,387 - AO356_18505 0.14 +0.9
4,163,387 - AO356_18505 0.14 +0.4
4,163,387 - AO356_18505 0.14 -1.4
4,163,453 - AO356_18505 0.22 +0.5
4,163,479 - AO356_18505 0.25 -0.8
4,163,515 + AO356_18505 0.29 +0.9
4,163,515 + AO356_18505 0.29 -0.4
4,163,515 + AO356_18505 0.29 +1.4
4,163,516 - AO356_18505 0.29 +2.8
4,163,524 + AO356_18505 0.30 +0.1
4,163,547 - AO356_18505 0.33 -0.5
4,163,570 - AO356_18505 0.36 +0.4
4,163,570 - AO356_18505 0.36 -0.6
4,163,570 - AO356_18505 0.36 -0.5
4,163,689 + AO356_18505 0.50 +0.1
4,163,689 + AO356_18505 0.50 +0.5
4,163,690 - AO356_18505 0.50 -1.9
4,163,807 + AO356_18505 0.64 +2.3
4,163,807 + AO356_18505 0.64 +0.5
4,163,807 + AO356_18505 0.64 +0.9
4,163,807 + AO356_18505 0.64 +0.8
4,163,807 + AO356_18505 0.64 -0.1
4,163,807 + AO356_18505 0.64 -1.0
4,163,807 + AO356_18505 0.64 +1.0
4,163,808 - AO356_18505 0.65 -1.5
4,163,859 + AO356_18505 0.71 -1.3
4,163,860 - AO356_18505 0.71 +0.3
4,164,388 - AO356_18510 0.29 +0.6
4,164,388 - AO356_18510 0.29 -0.2
4,164,463 + AO356_18510 0.37 +1.4
4,164,463 + AO356_18510 0.37 -0.6
4,164,464 - AO356_18510 0.37 +0.1
4,164,464 - AO356_18510 0.37 -0.5
4,164,488 + AO356_18510 0.39 +0.7
4,165,065 + +2.5
4,165,065 + -0.3
4,165,066 - -0.1
4,165,066 - -0.1
4,165,066 - +0.7
4,165,066 - +0.7
4,165,066 - +0.9
4,165,066 - +0.1

Or see this region's nucleotide sequence