Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18360

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18350 and AO356_18355 overlap by 8 nucleotidesAO356_18355 and AO356_18360 overlap by 4 nucleotidesAO356_18360 and AO356_18365 overlap by 14 nucleotidesAO356_18365 and AO356_18370 overlap by 4 nucleotides AO356_18350: AO356_18350 - NADH:quinone oxidoreductase, at 4,132,266 to 4,132,799 _18350 AO356_18355: AO356_18355 - electron transporter RnfG, at 4,132,792 to 4,133,400 _18355 AO356_18360: AO356_18360 - electron transporter RnfD, at 4,133,397 to 4,134,377 _18360 AO356_18365: AO356_18365 - (4Fe-4S)-binding protein, at 4,134,364 to 4,135,377 _18365 AO356_18370: AO356_18370 - NADH:quinone oxidoreductase, at 4,135,374 to 4,135,946 _18370 Position (kb) 4133 4134 4135Strain fitness (log2 ratio) -1 0 1 2 3at 4132.535 kb on - strand, within AO356_18350at 4132.535 kb on - strand, within AO356_18350at 4132.552 kb on + strand, within AO356_18350at 4132.587 kb on + strand, within AO356_18350at 4132.587 kb on + strand, within AO356_18350at 4132.587 kb on + strand, within AO356_18350at 4132.587 kb on + strand, within AO356_18350at 4132.587 kb on + strand, within AO356_18350at 4132.588 kb on - strand, within AO356_18350at 4132.588 kb on - strand, within AO356_18350at 4132.588 kb on - strand, within AO356_18350at 4132.588 kb on - strand, within AO356_18350at 4132.713 kb on + strand, within AO356_18350at 4132.713 kb on + strand, within AO356_18350at 4132.714 kb on - strand, within AO356_18350at 4132.793 kb on + strandat 4132.793 kb on + strandat 4132.793 kb on + strandat 4132.838 kb on + strandat 4132.839 kb on - strandat 4132.839 kb on - strandat 4133.187 kb on + strand, within AO356_18355at 4133.187 kb on + strand, within AO356_18355at 4133.188 kb on - strand, within AO356_18355at 4133.188 kb on - strand, within AO356_18355at 4133.188 kb on - strand, within AO356_18355at 4133.188 kb on - strand, within AO356_18355at 4133.188 kb on - strand, within AO356_18355at 4133.243 kb on + strand, within AO356_18355at 4133.243 kb on + strand, within AO356_18355at 4133.336 kb on + strand, within AO356_18355at 4133.336 kb on + strand, within AO356_18355at 4133.336 kb on + strand, within AO356_18355at 4133.337 kb on - strand, within AO356_18355at 4133.337 kb on - strand, within AO356_18355at 4133.337 kb on - strand, within AO356_18355at 4133.696 kb on + strand, within AO356_18360at 4133.697 kb on - strand, within AO356_18360at 4133.981 kb on + strand, within AO356_18360at 4133.981 kb on + strand, within AO356_18360at 4133.981 kb on + strand, within AO356_18360at 4133.981 kb on + strand, within AO356_18360at 4133.981 kb on + strand, within AO356_18360at 4133.981 kb on + strand, within AO356_18360at 4133.982 kb on - strand, within AO356_18360at 4133.982 kb on - strand, within AO356_18360at 4133.982 kb on - strand, within AO356_18360at 4134.013 kb on + strand, within AO356_18360at 4134.014 kb on - strand, within AO356_18360at 4134.121 kb on + strand, within AO356_18360at 4134.121 kb on + strand, within AO356_18360at 4134.121 kb on + strand, within AO356_18360at 4134.265 kb on - strand, within AO356_18360at 4134.265 kb on - strand, within AO356_18360at 4134.773 kb on - strand, within AO356_18365at 4135.359 kb on + strandat 4135.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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4,132,535 - AO356_18350 0.50 -0.4
4,132,535 - AO356_18350 0.50 +0.6
4,132,552 + AO356_18350 0.54 +0.1
4,132,587 + AO356_18350 0.60 +0.9
4,132,587 + AO356_18350 0.60 +1.7
4,132,587 + AO356_18350 0.60 -0.9
4,132,587 + AO356_18350 0.60 -1.6
4,132,587 + AO356_18350 0.60 -1.0
4,132,588 - AO356_18350 0.60 -0.6
4,132,588 - AO356_18350 0.60 +0.2
4,132,588 - AO356_18350 0.60 +0.5
4,132,588 - AO356_18350 0.60 +0.8
4,132,713 + AO356_18350 0.84 +0.4
4,132,713 + AO356_18350 0.84 +0.8
4,132,714 - AO356_18350 0.84 +0.4
4,132,793 + -0.1
4,132,793 + -0.4
4,132,793 + +0.4
4,132,838 + +0.3
4,132,839 - +0.7
4,132,839 - +1.5
4,133,187 + AO356_18355 0.65 +0.6
4,133,187 + AO356_18355 0.65 +0.7
4,133,188 - AO356_18355 0.65 +0.2
4,133,188 - AO356_18355 0.65 -0.2
4,133,188 - AO356_18355 0.65 +0.8
4,133,188 - AO356_18355 0.65 +1.0
4,133,188 - AO356_18355 0.65 +0.7
4,133,243 + AO356_18355 0.74 +0.7
4,133,243 + AO356_18355 0.74 +0.4
4,133,336 + AO356_18355 0.89 +0.8
4,133,336 + AO356_18355 0.89 -0.8
4,133,336 + AO356_18355 0.89 -0.3
4,133,337 - AO356_18355 0.89 -0.3
4,133,337 - AO356_18355 0.89 +0.9
4,133,337 - AO356_18355 0.89 +0.7
4,133,696 + AO356_18360 0.30 +0.2
4,133,697 - AO356_18360 0.31 +1.3
4,133,981 + AO356_18360 0.60 +0.4
4,133,981 + AO356_18360 0.60 -1.0
4,133,981 + AO356_18360 0.60 -0.7
4,133,981 + AO356_18360 0.60 +1.0
4,133,981 + AO356_18360 0.60 +0.5
4,133,981 + AO356_18360 0.60 -0.0
4,133,982 - AO356_18360 0.60 +2.2
4,133,982 - AO356_18360 0.60 +0.4
4,133,982 - AO356_18360 0.60 -0.2
4,134,013 + AO356_18360 0.63 +0.3
4,134,014 - AO356_18360 0.63 +1.6
4,134,121 + AO356_18360 0.74 +1.9
4,134,121 + AO356_18360 0.74 +1.3
4,134,121 + AO356_18360 0.74 +0.6
4,134,265 - AO356_18360 0.88 +0.7
4,134,265 - AO356_18360 0.88 +1.0
4,134,773 - AO356_18365 0.40 +1.8
4,135,359 + +1.7
4,135,360 - +3.2

Or see this region's nucleotide sequence