Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18065 and AO356_18070 are separated by 1 nucleotides AO356_18070 and AO356_18075 are separated by 63 nucleotides AO356_18075 and AO356_18080 are separated by 118 nucleotides
AO356_18065: AO356_18065 - 7-carboxy-7-deazaguanine synthase, at 4,072,507 to 4,073,154
_18065
AO356_18070: AO356_18070 - 7-cyano-7-deazaguanine synthase, at 4,073,156 to 4,073,848
_18070
AO356_18075: AO356_18075 - tRNA-Lys, at 4,073,912 to 4,073,987
_18075
AO356_18080: AO356_18080 - LysR family transcriptional regulator, at 4,074,106 to 4,075,041
_18080
Position (kb)
4073
4074 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4072.966 kb on + strand, within AO356_18065 at 4072.966 kb on + strand, within AO356_18065 at 4072.967 kb on - strand, within AO356_18065 at 4073.088 kb on + strand, within AO356_18065 at 4073.121 kb on + strand at 4073.121 kb on + strand at 4073.122 kb on - strand at 4073.125 kb on + strand at 4073.125 kb on + strand at 4073.126 kb on - strand at 4073.126 kb on - strand at 4073.126 kb on - strand at 4073.282 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.453 kb on + strand, within AO356_18070 at 4073.454 kb on - strand, within AO356_18070 at 4073.454 kb on - strand, within AO356_18070 at 4073.454 kb on - strand, within AO356_18070 at 4073.454 kb on - strand, within AO356_18070 at 4073.454 kb on - strand, within AO356_18070 at 4073.454 kb on - strand, within AO356_18070 at 4073.470 kb on + strand, within AO356_18070 at 4073.470 kb on + strand, within AO356_18070 at 4073.471 kb on - strand, within AO356_18070 at 4073.471 kb on - strand, within AO356_18070 at 4073.872 kb on + strand at 4073.889 kb on + strand at 4074.108 kb on - strand at 4074.108 kb on - strand at 4074.332 kb on - strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.335 kb on + strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.336 kb on - strand, within AO356_18080 at 4074.366 kb on + strand, within AO356_18080 at 4074.368 kb on + strand, within AO356_18080 at 4074.368 kb on + strand, within AO356_18080 at 4074.368 kb on + strand, within AO356_18080 at 4074.368 kb on + strand, within AO356_18080 at 4074.369 kb on - strand, within AO356_18080 at 4074.369 kb on - strand, within AO356_18080 at 4074.369 kb on - strand, within AO356_18080 at 4074.369 kb on - strand, within AO356_18080 at 4074.526 kb on + strand, within AO356_18080 at 4074.526 kb on + strand, within AO356_18080 at 4074.526 kb on + strand, within AO356_18080 at 4074.526 kb on + strand, within AO356_18080 at 4074.527 kb on - strand, within AO356_18080 at 4074.622 kb on - strand, within AO356_18080 at 4074.622 kb on - strand, within AO356_18080 at 4074.642 kb on + strand, within AO356_18080 at 4074.645 kb on + strand, within AO356_18080 at 4074.646 kb on - strand, within AO356_18080 at 4074.740 kb on - strand, within AO356_18080 at 4074.790 kb on + strand, within AO356_18080 at 4074.791 kb on - strand, within AO356_18080 at 4074.791 kb on - strand, within AO356_18080 at 4074.794 kb on - strand, within AO356_18080 at 4074.794 kb on - strand, within AO356_18080 at 4074.805 kb on - strand, within AO356_18080 at 4074.807 kb on + strand, within AO356_18080 at 4074.807 kb on + strand, within AO356_18080 at 4074.807 kb on + strand, within AO356_18080 at 4074.807 kb on + strand, within AO356_18080 at 4074.811 kb on + strand, within AO356_18080 at 4074.812 kb on - strand, within AO356_18080 at 4074.812 kb on - strand, within AO356_18080 at 4074.812 kb on - strand, within AO356_18080 at 4074.821 kb on + strand, within AO356_18080 at 4074.895 kb on - strand, within AO356_18080 at 4074.895 kb on - strand, within AO356_18080 at 4074.914 kb on + strand, within AO356_18080 at 4074.914 kb on + strand, within AO356_18080 at 4074.914 kb on + strand, within AO356_18080 at 4074.914 kb on + strand, within AO356_18080 at 4074.914 kb on + strand, within AO356_18080 at 4074.915 kb on - strand, within AO356_18080 at 4074.915 kb on - strand, within AO356_18080 at 4074.915 kb on - strand, within AO356_18080 at 4074.915 kb on - strand, within AO356_18080 at 4074.915 kb on - strand, within AO356_18080 at 4074.919 kb on + strand, within AO356_18080 at 4074.920 kb on - strand, within AO356_18080 at 4074.920 kb on - strand, within AO356_18080 at 4074.977 kb on + strand at 4074.977 kb on + strand at 4074.977 kb on + strand at 4074.977 kb on + strand at 4074.978 kb on - strand at 4074.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 4,072,966 + AO356_18065 0.71 -0.1 4,072,966 + AO356_18065 0.71 +1.0 4,072,967 - AO356_18065 0.71 -0.9 4,073,088 + AO356_18065 0.90 -0.3 4,073,121 + -0.4 4,073,121 + -0.7 4,073,122 - +1.6 4,073,125 + +1.1 4,073,125 + +0.1 4,073,126 - -1.5 4,073,126 - -0.9 4,073,126 - -2.0 4,073,282 + AO356_18070 0.18 +1.4 4,073,453 + AO356_18070 0.43 +0.4 4,073,453 + AO356_18070 0.43 -2.1 4,073,453 + AO356_18070 0.43 -0.8 4,073,453 + AO356_18070 0.43 +0.6 4,073,453 + AO356_18070 0.43 -0.5 4,073,453 + AO356_18070 0.43 +0.6 4,073,453 + AO356_18070 0.43 -1.2 4,073,454 - AO356_18070 0.43 -0.2 4,073,454 - AO356_18070 0.43 -0.1 4,073,454 - AO356_18070 0.43 -0.8 4,073,454 - AO356_18070 0.43 +0.1 4,073,454 - AO356_18070 0.43 -1.0 4,073,454 - AO356_18070 0.43 -1.6 4,073,470 + AO356_18070 0.45 -1.7 4,073,470 + AO356_18070 0.45 -0.4 4,073,471 - AO356_18070 0.45 -1.1 4,073,471 - AO356_18070 0.45 -0.9 4,073,872 + +1.0 4,073,889 + -0.2 4,074,108 - -0.5 4,074,108 - -0.5 4,074,332 - AO356_18080 0.24 +0.7 4,074,335 + AO356_18080 0.24 +0.5 4,074,335 + AO356_18080 0.24 +0.6 4,074,335 + AO356_18080 0.24 -0.2 4,074,335 + AO356_18080 0.24 -0.6 4,074,335 + AO356_18080 0.24 -0.2 4,074,335 + AO356_18080 0.24 -0.2 4,074,335 + AO356_18080 0.24 +1.0 4,074,336 - AO356_18080 0.25 -1.6 4,074,336 - AO356_18080 0.25 -0.4 4,074,336 - AO356_18080 0.25 +1.1 4,074,336 - AO356_18080 0.25 +0.4 4,074,336 - AO356_18080 0.25 +0.2 4,074,336 - AO356_18080 0.25 -0.2 4,074,336 - AO356_18080 0.25 +0.6 4,074,336 - AO356_18080 0.25 -1.4 4,074,336 - AO356_18080 0.25 -2.4 4,074,336 - AO356_18080 0.25 +0.1 4,074,366 + AO356_18080 0.28 -1.3 4,074,368 + AO356_18080 0.28 -0.4 4,074,368 + AO356_18080 0.28 +2.3 4,074,368 + AO356_18080 0.28 -1.5 4,074,368 + AO356_18080 0.28 +0.1 4,074,369 - AO356_18080 0.28 +0.7 4,074,369 - AO356_18080 0.28 +0.2 4,074,369 - AO356_18080 0.28 -0.6 4,074,369 - AO356_18080 0.28 +1.7 4,074,526 + AO356_18080 0.45 -0.3 4,074,526 + AO356_18080 0.45 +1.9 4,074,526 + AO356_18080 0.45 -1.1 4,074,526 + AO356_18080 0.45 +0.3 4,074,527 - AO356_18080 0.45 -1.3 4,074,622 - AO356_18080 0.55 +0.1 4,074,622 - AO356_18080 0.55 -0.9 4,074,642 + AO356_18080 0.57 -0.0 4,074,645 + AO356_18080 0.58 +1.4 4,074,646 - AO356_18080 0.58 +2.7 4,074,740 - AO356_18080 0.68 -0.4 4,074,790 + AO356_18080 0.73 +0.2 4,074,791 - AO356_18080 0.73 +0.1 4,074,791 - AO356_18080 0.73 -1.6 4,074,794 - AO356_18080 0.74 -2.4 4,074,794 - AO356_18080 0.74 +0.9 4,074,805 - AO356_18080 0.75 -0.7 4,074,807 + AO356_18080 0.75 -0.2 4,074,807 + AO356_18080 0.75 -0.6 4,074,807 + AO356_18080 0.75 +1.4 4,074,807 + AO356_18080 0.75 +2.1 4,074,811 + AO356_18080 0.75 -0.3 4,074,812 - AO356_18080 0.75 -0.9 4,074,812 - AO356_18080 0.75 -0.5 4,074,812 - AO356_18080 0.75 -0.2 4,074,821 + AO356_18080 0.76 -0.5 4,074,895 - AO356_18080 0.84 +0.6 4,074,895 - AO356_18080 0.84 +0.5 4,074,914 + AO356_18080 0.86 -0.0 4,074,914 + AO356_18080 0.86 +1.2 4,074,914 + AO356_18080 0.86 +1.5 4,074,914 + AO356_18080 0.86 -0.1 4,074,914 + AO356_18080 0.86 +1.1 4,074,915 - AO356_18080 0.86 -0.1 4,074,915 - AO356_18080 0.86 +0.4 4,074,915 - AO356_18080 0.86 +0.1 4,074,915 - AO356_18080 0.86 -1.6 4,074,915 - AO356_18080 0.86 +1.5 4,074,919 + AO356_18080 0.87 +1.1 4,074,920 - AO356_18080 0.87 +2.7 4,074,920 - AO356_18080 0.87 -0.2 4,074,977 + -2.0 4,074,977 + +0.6 4,074,977 + +0.5 4,074,977 + -0.3 4,074,978 - -0.9 4,074,978 - -0.4
Or see this region's nucleotide sequence