Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_17090 and AO356_17095 overlap by 4 nucleotides AO356_17095 and AO356_17100 are separated by 102 nucleotides AO356_17100 and AO356_17105 overlap by 1 nucleotides
AO356_17090: AO356_17090 - phospholipid-binding protein, at 3,847,065 to 3,847,643
_17090
AO356_17095: AO356_17095 - phosphoheptose isomerase, at 3,847,640 to 3,848,233
_17095
AO356_17100: AO356_17100 - hypothetical protein, at 3,848,336 to 3,848,698
_17100
AO356_17105: AO356_17105 - hypothetical protein, at 3,848,698 to 3,850,509
_17105
Position (kb)
3848
3849 Strain fitness (log2 ratio)
-2
-1
0
1 at 3847.338 kb on + strand, within AO356_17090 at 3847.338 kb on + strand, within AO356_17090 at 3847.339 kb on - strand, within AO356_17090 at 3847.339 kb on - strand, within AO356_17090 at 3847.405 kb on - strand, within AO356_17090 at 3847.405 kb on - strand, within AO356_17090 at 3847.405 kb on - strand, within AO356_17090 at 3847.405 kb on - strand, within AO356_17090 at 3847.405 kb on - strand, within AO356_17090 at 3847.405 kb on - strand, within AO356_17090 at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.246 kb on - strand at 3848.250 kb on - strand at 3848.306 kb on - strand at 3848.449 kb on - strand, within AO356_17100 at 3848.449 kb on - strand, within AO356_17100 at 3848.449 kb on - strand, within AO356_17100 at 3848.519 kb on - strand, within AO356_17100 at 3848.547 kb on - strand, within AO356_17100 at 3848.547 kb on - strand, within AO356_17100 at 3848.550 kb on - strand, within AO356_17100 at 3848.767 kb on + strand at 3848.767 kb on + strand at 3848.767 kb on + strand at 3848.885 kb on + strand, within AO356_17105 at 3849.005 kb on + strand, within AO356_17105 at 3849.005 kb on + strand, within AO356_17105 at 3849.005 kb on + strand, within AO356_17105 at 3849.050 kb on + strand, within AO356_17105 at 3849.071 kb on + strand, within AO356_17105 at 3849.071 kb on + strand, within AO356_17105 at 3849.072 kb on - strand, within AO356_17105 at 3849.072 kb on - strand, within AO356_17105 at 3849.482 kb on + strand, within AO356_17105 at 3849.482 kb on + strand, within AO356_17105 at 3849.482 kb on + strand, within AO356_17105 at 3849.482 kb on + strand, within AO356_17105 at 3849.483 kb on - strand, within AO356_17105 at 3849.632 kb on + strand, within AO356_17105 at 3849.633 kb on - strand, within AO356_17105 at 3849.677 kb on + strand, within AO356_17105
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 3,847,338 + AO356_17090 0.47 -0.4 3,847,338 + AO356_17090 0.47 -1.7 3,847,339 - AO356_17090 0.47 -0.6 3,847,339 - AO356_17090 0.47 -0.6 3,847,405 - AO356_17090 0.59 -0.4 3,847,405 - AO356_17090 0.59 -1.4 3,847,405 - AO356_17090 0.59 -0.7 3,847,405 - AO356_17090 0.59 +0.3 3,847,405 - AO356_17090 0.59 -2.2 3,847,405 - AO356_17090 0.59 -0.5 3,848,246 - +1.3 3,848,246 - -0.5 3,848,246 - +0.5 3,848,246 - -2.0 3,848,246 - -1.9 3,848,246 - -1.5 3,848,246 - +0.5 3,848,246 - -0.9 3,848,246 - +1.0 3,848,246 - +0.2 3,848,246 - -0.9 3,848,250 - +0.5 3,848,306 - -0.5 3,848,449 - AO356_17100 0.31 -0.7 3,848,449 - AO356_17100 0.31 -0.4 3,848,449 - AO356_17100 0.31 -0.3 3,848,519 - AO356_17100 0.50 -0.3 3,848,547 - AO356_17100 0.58 +0.5 3,848,547 - AO356_17100 0.58 +0.2 3,848,550 - AO356_17100 0.59 -1.2 3,848,767 + +0.9 3,848,767 + +0.5 3,848,767 + -0.6 3,848,885 + AO356_17105 0.10 -1.3 3,849,005 + AO356_17105 0.17 -2.2 3,849,005 + AO356_17105 0.17 -2.5 3,849,005 + AO356_17105 0.17 -0.1 3,849,050 + AO356_17105 0.19 -1.8 3,849,071 + AO356_17105 0.21 -0.5 3,849,071 + AO356_17105 0.21 +0.8 3,849,072 - AO356_17105 0.21 -0.6 3,849,072 - AO356_17105 0.21 +0.1 3,849,482 + AO356_17105 0.43 -0.3 3,849,482 + AO356_17105 0.43 -0.9 3,849,482 + AO356_17105 0.43 +0.7 3,849,482 + AO356_17105 0.43 -0.5 3,849,483 - AO356_17105 0.43 +0.3 3,849,632 + AO356_17105 0.52 +0.0 3,849,633 - AO356_17105 0.52 +0.7 3,849,677 + AO356_17105 0.54 -2.2
Or see this region's nucleotide sequence