Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13355 and AO356_13360 are separated by 197 nucleotides AO356_13360 and AO356_13365 are separated by 73 nucleotides AO356_13365 and AO356_13370 are separated by 90 nucleotides AO356_13370 and AO356_13375 are separated by 54 nucleotides
AO356_13355: AO356_13355 - RNA polymerase subunit sigma-70, at 3,034,716 to 3,035,570
_13355
AO356_13360: AO356_13360 - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,035,768 to 3,036,490
_13360
AO356_13365: AO356_13365 - hypothetical protein, at 3,036,564 to 3,036,935
_13365
AO356_13370: AO356_13370 - thiamine biosynthesis protein ThiS, at 3,037,026 to 3,037,226
_13370
AO356_13375: AO356_13375 - thiazole synthase, at 3,037,281 to 3,038,075
_13375
Position (kb)
3035
3036
3037 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3035.770 kb on - strand at 3035.814 kb on + strand at 3035.814 kb on + strand at 3035.814 kb on + strand at 3035.814 kb on + strand at 3035.814 kb on + strand at 3035.815 kb on - strand at 3035.815 kb on - strand at 3035.815 kb on - strand at 3035.874 kb on + strand, within AO356_13360 at 3035.874 kb on + strand, within AO356_13360 at 3035.875 kb on - strand, within AO356_13360 at 3036.036 kb on + strand, within AO356_13360 at 3036.036 kb on + strand, within AO356_13360 at 3036.036 kb on + strand, within AO356_13360 at 3036.037 kb on - strand, within AO356_13360 at 3036.037 kb on - strand, within AO356_13360 at 3036.460 kb on + strand at 3036.461 kb on - strand at 3036.479 kb on + strand at 3036.480 kb on - strand at 3036.490 kb on + strand at 3036.490 kb on + strand at 3036.490 kb on + strand at 3036.490 kb on + strand at 3036.490 kb on + strand at 3036.490 kb on + strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.491 kb on - strand at 3036.526 kb on + strand at 3036.527 kb on - strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.528 kb on + strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.529 kb on - strand at 3036.572 kb on + strand at 3036.573 kb on - strand at 3036.573 kb on - strand at 3036.573 kb on - strand at 3036.605 kb on + strand, within AO356_13365 at 3036.666 kb on + strand, within AO356_13365 at 3036.667 kb on - strand, within AO356_13365 at 3036.667 kb on - strand, within AO356_13365 at 3036.696 kb on + strand, within AO356_13365 at 3036.696 kb on + strand, within AO356_13365 at 3036.696 kb on + strand, within AO356_13365 at 3036.696 kb on + strand, within AO356_13365 at 3036.696 kb on + strand, within AO356_13365 at 3036.696 kb on + strand, within AO356_13365 at 3036.697 kb on - strand, within AO356_13365 at 3036.697 kb on - strand, within AO356_13365 at 3036.822 kb on + strand, within AO356_13365 at 3036.822 kb on + strand, within AO356_13365 at 3036.822 kb on + strand, within AO356_13365 at 3036.823 kb on - strand, within AO356_13365 at 3036.823 kb on - strand, within AO356_13365 at 3036.988 kb on + strand at 3036.988 kb on + strand at 3036.989 kb on - strand at 3036.989 kb on - strand at 3037.325 kb on + strand at 3037.325 kb on + strand at 3037.325 kb on + strand at 3037.325 kb on + strand at 3037.325 kb on + strand at 3037.326 kb on - strand at 3037.326 kb on - strand at 3037.329 kb on + strand at 3037.329 kb on + strand at 3037.329 kb on + strand at 3037.330 kb on - strand at 3037.330 kb on - strand at 3037.348 kb on + strand at 3037.348 kb on + strand at 3037.349 kb on - strand at 3037.363 kb on - strand, within AO356_13375
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 3,035,770 - +2.1 3,035,814 + -0.6 3,035,814 + +0.4 3,035,814 + -1.0 3,035,814 + -0.1 3,035,814 + -0.1 3,035,815 - -1.2 3,035,815 - +1.0 3,035,815 - +0.7 3,035,874 + AO356_13360 0.15 -0.9 3,035,874 + AO356_13360 0.15 -0.1 3,035,875 - AO356_13360 0.15 -0.6 3,036,036 + AO356_13360 0.37 -2.3 3,036,036 + AO356_13360 0.37 +0.1 3,036,036 + AO356_13360 0.37 +1.0 3,036,037 - AO356_13360 0.37 -0.4 3,036,037 - AO356_13360 0.37 -0.3 3,036,460 + -0.2 3,036,461 - -1.0 3,036,479 + -0.4 3,036,480 - -0.2 3,036,490 + -0.3 3,036,490 + +0.0 3,036,490 + +2.5 3,036,490 + -0.3 3,036,490 + -2.1 3,036,490 + -1.4 3,036,491 - -0.7 3,036,491 - -0.2 3,036,491 - +0.5 3,036,491 - +0.0 3,036,491 - -0.2 3,036,491 - -0.8 3,036,491 - +0.6 3,036,491 - -1.8 3,036,526 + -0.8 3,036,527 - -0.9 3,036,528 + +0.5 3,036,528 + +0.3 3,036,528 + -0.6 3,036,528 + +0.1 3,036,528 + -0.5 3,036,528 + -0.5 3,036,528 + +0.6 3,036,528 + +0.1 3,036,528 + +1.1 3,036,528 + +0.2 3,036,528 + +0.4 3,036,528 + +0.1 3,036,528 + -0.1 3,036,528 + -1.2 3,036,528 + -1.2 3,036,528 + +0.5 3,036,528 + -1.1 3,036,528 + -0.3 3,036,528 + +1.1 3,036,529 - +0.6 3,036,529 - +0.9 3,036,529 - +0.0 3,036,529 - +0.4 3,036,529 - -0.4 3,036,529 - -0.3 3,036,529 - -0.4 3,036,529 - +0.1 3,036,529 - +0.7 3,036,572 + +1.4 3,036,573 - +0.7 3,036,573 - +0.5 3,036,573 - -0.3 3,036,605 + AO356_13365 0.11 -1.4 3,036,666 + AO356_13365 0.27 +1.2 3,036,667 - AO356_13365 0.28 +0.7 3,036,667 - AO356_13365 0.28 -0.7 3,036,696 + AO356_13365 0.35 +0.2 3,036,696 + AO356_13365 0.35 +0.9 3,036,696 + AO356_13365 0.35 -0.4 3,036,696 + AO356_13365 0.35 -0.9 3,036,696 + AO356_13365 0.35 -0.5 3,036,696 + AO356_13365 0.35 +1.3 3,036,697 - AO356_13365 0.36 +0.2 3,036,697 - AO356_13365 0.36 +1.3 3,036,822 + AO356_13365 0.69 +2.8 3,036,822 + AO356_13365 0.69 -0.3 3,036,822 + AO356_13365 0.69 +1.3 3,036,823 - AO356_13365 0.70 +0.4 3,036,823 - AO356_13365 0.70 -0.7 3,036,988 + -0.2 3,036,988 + -0.2 3,036,989 - -0.4 3,036,989 - +0.7 3,037,325 + -0.7 3,037,325 + +0.0 3,037,325 + -2.1 3,037,325 + -1.0 3,037,325 + +0.2 3,037,326 - +0.3 3,037,326 - +0.2 3,037,329 + +0.4 3,037,329 + +0.7 3,037,329 + +0.0 3,037,330 - -1.1 3,037,330 - +1.6 3,037,348 + -2.0 3,037,348 + -0.0 3,037,349 - +2.3 3,037,363 - AO356_13375 0.10 +1.2
Or see this region's nucleotide sequence