Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09385 and AO356_09390 are separated by 179 nucleotides AO356_09390 and AO356_09395 are separated by 4 nucleotides
AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614
_09385
AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312
_09390
AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404
_09395
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-2
-1
0
1 at 2126.659 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2127.426 kb on + strand at 2127.427 kb on - strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.475 kb on + strand at 2127.717 kb on + strand, within AO356_09395 at 2127.877 kb on + strand, within AO356_09395 at 2127.877 kb on + strand, within AO356_09395 at 2127.878 kb on - strand, within AO356_09395 at 2127.878 kb on - strand, within AO356_09395 at 2127.923 kb on - strand, within AO356_09395 at 2128.032 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.254 kb on + strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395 at 2128.255 kb on - strand, within AO356_09395
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 2,126,659 - -0.9 2,126,681 - -1.4 2,126,681 - +0.5 2,126,681 - -2.0 2,126,681 - -1.4 2,127,426 + +0.9 2,127,427 - +0.3 2,127,454 + +1.2 2,127,454 + +1.1 2,127,454 + +0.1 2,127,454 + +1.4 2,127,454 + +0.1 2,127,454 + +1.1 2,127,454 + +1.3 2,127,455 - -0.6 2,127,455 - -1.3 2,127,455 - +0.2 2,127,455 - -0.8 2,127,455 - -1.5 2,127,455 - -0.1 2,127,455 - -0.9 2,127,455 - -1.7 2,127,455 - +0.5 2,127,455 - -1.8 2,127,455 - -0.3 2,127,455 - -1.1 2,127,458 + -0.1 2,127,458 + -0.8 2,127,458 + +0.3 2,127,458 + -1.4 2,127,459 - +0.2 2,127,459 - -1.0 2,127,459 - +0.6 2,127,475 + -0.0 2,127,717 + AO356_09395 0.19 +0.9 2,127,877 + AO356_09395 0.27 +0.5 2,127,877 + AO356_09395 0.27 +0.6 2,127,878 - AO356_09395 0.27 +1.7 2,127,878 - AO356_09395 0.27 +1.1 2,127,923 - AO356_09395 0.29 +0.4 2,128,032 + AO356_09395 0.34 +0.2 2,128,254 + AO356_09395 0.45 +0.8 2,128,254 + AO356_09395 0.45 +0.6 2,128,254 + AO356_09395 0.45 +1.3 2,128,254 + AO356_09395 0.45 -0.1 2,128,254 + AO356_09395 0.45 -0.5 2,128,254 + AO356_09395 0.45 -0.9 2,128,254 + AO356_09395 0.45 -0.0 2,128,254 + AO356_09395 0.45 +0.6 2,128,254 + AO356_09395 0.45 -0.6 2,128,254 + AO356_09395 0.45 +0.1 2,128,255 - AO356_09395 0.45 -2.1 2,128,255 - AO356_09395 0.45 -1.3 2,128,255 - AO356_09395 0.45 +0.7 2,128,255 - AO356_09395 0.45 -0.5 2,128,255 - AO356_09395 0.45 +0.8
Or see this region's nucleotide sequence