Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07740 and AO356_07745 are separated by 54 nucleotides AO356_07745 and AO356_07750 overlap by 4 nucleotides AO356_07750 and AO356_07755 are separated by 230 nucleotides
AO356_07740: AO356_07740 - chemotaxis protein, at 1,720,665 to 1,722,584
_07740
AO356_07745: AO356_07745 - plasmid stabilization protein, at 1,722,639 to 1,723,058
_07745
AO356_07750: AO356_07750 - plasmid stabilization protein, at 1,723,055 to 1,723,300
_07750
AO356_07755: AO356_07755 - toxin, at 1,723,531 to 1,726,080
_07755
Position (kb)
1723
1724 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1722.623 kb on - strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.626 kb on + strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.627 kb on - strand at 1722.692 kb on + strand, within AO356_07745 at 1722.708 kb on + strand, within AO356_07745 at 1722.731 kb on + strand, within AO356_07745 at 1722.732 kb on - strand, within AO356_07745 at 1722.802 kb on + strand, within AO356_07745 at 1723.053 kb on + strand at 1723.053 kb on + strand at 1723.054 kb on - strand at 1723.054 kb on - strand at 1723.065 kb on - strand at 1723.193 kb on + strand, within AO356_07750 at 1723.262 kb on + strand, within AO356_07750 at 1723.263 kb on - strand, within AO356_07750 at 1723.285 kb on + strand at 1723.286 kb on - strand at 1723.300 kb on + strand at 1723.301 kb on - strand at 1723.338 kb on + strand at 1723.339 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.344 kb on - strand at 1723.432 kb on + strand at 1723.454 kb on + strand at 1723.479 kb on + strand at 1723.480 kb on - strand at 1723.480 kb on - strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.521 kb on + strand at 1723.522 kb on - strand at 1723.619 kb on + strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.620 kb on - strand at 1723.723 kb on + strand at 1723.723 kb on + strand at 1723.723 kb on + strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.724 kb on - strand at 1723.741 kb on + strand at 1723.933 kb on + strand, within AO356_07755 at 1723.933 kb on + strand, within AO356_07755 at 1723.934 kb on - strand, within AO356_07755 at 1723.934 kb on - strand, within AO356_07755 at 1723.948 kb on + strand, within AO356_07755 at 1723.948 kb on + strand, within AO356_07755 at 1723.949 kb on - strand, within AO356_07755 at 1723.949 kb on - strand, within AO356_07755 at 1723.949 kb on - strand, within AO356_07755 at 1723.988 kb on + strand, within AO356_07755 at 1724.179 kb on + strand, within AO356_07755 at 1724.267 kb on - strand, within AO356_07755
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 1,722,623 - +0.0 1,722,626 + +2.4 1,722,626 + +0.1 1,722,626 + +0.1 1,722,626 + +1.0 1,722,626 + +0.6 1,722,626 + -0.6 1,722,626 + +1.3 1,722,627 - +0.1 1,722,627 - +2.6 1,722,627 - -1.4 1,722,627 - -0.4 1,722,627 - -0.9 1,722,627 - -1.5 1,722,627 - -0.1 1,722,627 - -0.7 1,722,627 - +1.3 1,722,627 - +0.5 1,722,692 + AO356_07745 0.13 -1.2 1,722,708 + AO356_07745 0.16 +1.7 1,722,731 + AO356_07745 0.22 +0.4 1,722,732 - AO356_07745 0.22 +0.5 1,722,802 + AO356_07745 0.39 +1.0 1,723,053 + +0.5 1,723,053 + +1.1 1,723,054 - +0.5 1,723,054 - +0.2 1,723,065 - +0.4 1,723,193 + AO356_07750 0.56 +0.7 1,723,262 + AO356_07750 0.84 -0.2 1,723,263 - AO356_07750 0.85 -0.2 1,723,285 + -0.2 1,723,286 - -0.4 1,723,300 + -0.6 1,723,301 - -1.1 1,723,338 + -1.7 1,723,339 - -1.1 1,723,344 - +0.1 1,723,344 - -0.5 1,723,344 - +1.9 1,723,432 + +1.1 1,723,454 + -0.1 1,723,479 + +0.5 1,723,480 - -0.4 1,723,480 - +1.4 1,723,521 + -1.1 1,723,521 + -0.4 1,723,521 + +1.6 1,723,522 - +0.3 1,723,619 + -0.4 1,723,620 - -1.2 1,723,620 - -1.6 1,723,620 - +0.3 1,723,620 - -1.1 1,723,620 - -1.8 1,723,620 - +1.5 1,723,723 + -0.1 1,723,723 + +0.4 1,723,723 + +0.6 1,723,724 - +0.8 1,723,724 - -0.2 1,723,724 - +0.2 1,723,724 - -0.9 1,723,724 - +0.1 1,723,741 + -0.4 1,723,933 + AO356_07755 0.16 -0.4 1,723,933 + AO356_07755 0.16 -0.4 1,723,934 - AO356_07755 0.16 +0.1 1,723,934 - AO356_07755 0.16 -0.7 1,723,948 + AO356_07755 0.16 +0.4 1,723,948 + AO356_07755 0.16 +0.1 1,723,949 - AO356_07755 0.16 -1.4 1,723,949 - AO356_07755 0.16 +1.1 1,723,949 - AO356_07755 0.16 -0.8 1,723,988 + AO356_07755 0.18 -0.7 1,724,179 + AO356_07755 0.25 +0.2 1,724,267 - AO356_07755 0.29 +0.8
Or see this region's nucleotide sequence