Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07515 and AO356_07520 are separated by 97 nucleotides AO356_07520 and AO356_07525 are separated by 59 nucleotides AO356_07525 and AO356_07530 overlap by 4 nucleotides AO356_07530 and AO356_07535 are separated by 7 nucleotides
AO356_07515: AO356_07515 - Fur family transcriptional regulator, at 1,665,133 to 1,665,537
_07515
AO356_07520: AO356_07520 - hypothetical protein, at 1,665,635 to 1,666,162
_07520
AO356_07525: AO356_07525 - protein RnfH, at 1,666,222 to 1,666,524
_07525
AO356_07530: AO356_07530 - ribosome association toxin RatA, at 1,666,521 to 1,666,964
_07530
AO356_07535: AO356_07535 - symporter, at 1,666,972 to 1,668,375
_07535
Position (kb)
1666
1667 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1666.160 kb on + strand at 1666.224 kb on - strand at 1666.502 kb on + strand at 1666.502 kb on + strand at 1666.503 kb on - strand at 1666.503 kb on - strand at 1666.503 kb on - strand at 1666.514 kb on - strand at 1666.514 kb on - strand at 1666.514 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1666.967 kb on - strand at 1667.000 kb on - strand at 1667.000 kb on - strand at 1667.000 kb on - strand at 1667.025 kb on - strand at 1667.025 kb on - strand at 1667.025 kb on - strand at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.267 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.269 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535 at 1667.367 kb on - strand, within AO356_07535
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 1,666,160 + +0.9 1,666,224 - -0.0 1,666,502 + +2.0 1,666,502 + +1.9 1,666,503 - +2.3 1,666,503 - +2.9 1,666,503 - +2.1 1,666,514 - +1.2 1,666,514 - +1.6 1,666,514 - +1.5 1,666,967 - -1.0 1,666,967 - +2.0 1,666,967 - -2.2 1,666,967 - +2.4 1,666,967 - +1.1 1,666,967 - +1.3 1,666,967 - +1.1 1,666,967 - +0.2 1,666,967 - -2.0 1,666,967 - -0.6 1,667,000 - -0.7 1,667,000 - -0.0 1,667,000 - -1.5 1,667,025 - +2.2 1,667,025 - -0.6 1,667,025 - -0.5 1,667,267 - AO356_07535 0.21 -0.3 1,667,267 - AO356_07535 0.21 +0.0 1,667,267 - AO356_07535 0.21 +0.3 1,667,267 - AO356_07535 0.21 -2.3 1,667,267 - AO356_07535 0.21 -0.6 1,667,267 - AO356_07535 0.21 +0.1 1,667,267 - AO356_07535 0.21 -0.3 1,667,267 - AO356_07535 0.21 -0.8 1,667,267 - AO356_07535 0.21 +0.1 1,667,269 - AO356_07535 0.21 -1.0 1,667,269 - AO356_07535 0.21 +0.2 1,667,269 - AO356_07535 0.21 +0.5 1,667,269 - AO356_07535 0.21 +0.9 1,667,269 - AO356_07535 0.21 -2.7 1,667,269 - AO356_07535 0.21 +0.5 1,667,269 - AO356_07535 0.21 -0.7 1,667,269 - AO356_07535 0.21 +0.2 1,667,269 - AO356_07535 0.21 +0.2 1,667,269 - AO356_07535 0.21 -1.4 1,667,269 - AO356_07535 0.21 -0.7 1,667,269 - AO356_07535 0.21 -1.4 1,667,367 - AO356_07535 0.28 -0.4 1,667,367 - AO356_07535 0.28 +0.1 1,667,367 - AO356_07535 0.28 -0.8 1,667,367 - AO356_07535 0.28 -2.2 1,667,367 - AO356_07535 0.28 -0.7 1,667,367 - AO356_07535 0.28 -0.3 1,667,367 - AO356_07535 0.28 -0.6 1,667,367 - AO356_07535 0.28 -0.6 1,667,367 - AO356_07535 0.28 -1.1
Or see this region's nucleotide sequence