Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05795

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05780 and AO356_05785 are separated by 9 nucleotidesAO356_05785 and AO356_05790 overlap by 8 nucleotidesAO356_05790 and AO356_05795 overlap by 1 nucleotidesAO356_05795 and AO356_05800 are separated by 128 nucleotidesAO356_05800 and AO356_05805 are separated by 152 nucleotides AO356_05780: AO356_05780 - phage tail protein, at 1,284,794 to 1,285,810 _05780 AO356_05785: AO356_05785 - phage tail protein, at 1,285,820 to 1,286,032 _05785 AO356_05790: AO356_05790 - hypothetical protein, at 1,286,025 to 1,286,408 _05790 AO356_05795: AO356_05795 - phage tail protein, at 1,286,408 to 1,288,588 _05795 AO356_05800: AO356_05800 - hypothetical protein, at 1,288,717 to 1,289,292 _05800 AO356_05805: AO356_05805 - phage tail protein, at 1,289,445 to 1,289,951 _05805 Position (kb) 1286 1287 1288 1289Strain fitness (log2 ratio) -2 -1 0 1 2at 1285.776 kb on + strandat 1285.957 kb on + strand, within AO356_05785at 1285.957 kb on + strand, within AO356_05785at 1285.983 kb on + strand, within AO356_05785at 1286.027 kb on - strandat 1286.228 kb on - strand, within AO356_05790at 1286.228 kb on - strand, within AO356_05790at 1286.337 kb on + strand, within AO356_05790at 1286.350 kb on + strand, within AO356_05790at 1286.413 kb on + strandat 1286.413 kb on + strandat 1286.414 kb on - strandat 1286.414 kb on - strandat 1286.414 kb on - strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.550 kb on + strandat 1286.551 kb on - strandat 1286.925 kb on - strand, within AO356_05795at 1287.037 kb on + strand, within AO356_05795at 1287.037 kb on + strand, within AO356_05795at 1287.298 kb on + strand, within AO356_05795at 1287.893 kb on + strand, within AO356_05795at 1288.523 kb on - strandat 1288.523 kb on - strandat 1288.572 kb on + strandat 1288.572 kb on + strandat 1288.572 kb on + strandat 1288.573 kb on - strandat 1288.573 kb on - strandat 1288.573 kb on - strandat 1288.577 kb on - strandat 1288.577 kb on - strandat 1288.577 kb on - strandat 1288.577 kb on - strandat 1288.685 kb on + strandat 1288.686 kb on - strandat 1288.692 kb on + strandat 1288.979 kb on - strand, within AO356_05800at 1289.057 kb on + strand, within AO356_05800at 1289.057 kb on + strand, within AO356_05800at 1289.058 kb on - strand, within AO356_05800at 1289.058 kb on - strand, within AO356_05800at 1289.058 kb on - strand, within AO356_05800at 1289.076 kb on - strand, within AO356_05800at 1289.202 kb on - strand, within AO356_05800at 1289.309 kb on + strandat 1289.310 kb on - strandat 1289.446 kb on + strandat 1289.560 kb on + strand, within AO356_05805at 1289.560 kb on + strand, within AO356_05805at 1289.560 kb on + strand, within AO356_05805at 1289.561 kb on - strand, within AO356_05805

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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1,285,776 + -0.7
1,285,957 + AO356_05785 0.64 +0.2
1,285,957 + AO356_05785 0.64 +0.2
1,285,983 + AO356_05785 0.77 -0.1
1,286,027 - -1.4
1,286,228 - AO356_05790 0.53 -0.8
1,286,228 - AO356_05790 0.53 -0.7
1,286,337 + AO356_05790 0.81 -0.7
1,286,350 + AO356_05790 0.85 +0.6
1,286,413 + -1.0
1,286,413 + -0.4
1,286,414 - -1.3
1,286,414 - +0.8
1,286,414 - +0.6
1,286,550 + -0.2
1,286,550 + -0.1
1,286,550 + -0.0
1,286,550 + -0.0
1,286,550 + -0.3
1,286,551 - +1.0
1,286,925 - AO356_05795 0.24 -1.5
1,287,037 + AO356_05795 0.29 -0.6
1,287,037 + AO356_05795 0.29 +0.2
1,287,298 + AO356_05795 0.41 -0.9
1,287,893 + AO356_05795 0.68 -1.3
1,288,523 - +0.3
1,288,523 - +0.2
1,288,572 + -1.2
1,288,572 + +0.5
1,288,572 + -1.7
1,288,573 - -2.3
1,288,573 - +0.1
1,288,573 - +0.8
1,288,577 - -0.2
1,288,577 - +0.3
1,288,577 - -0.2
1,288,577 - -2.0
1,288,685 + -0.4
1,288,686 - +0.5
1,288,692 + -0.7
1,288,979 - AO356_05800 0.45 +0.7
1,289,057 + AO356_05800 0.59 -0.5
1,289,057 + AO356_05800 0.59 -1.1
1,289,058 - AO356_05800 0.59 +2.1
1,289,058 - AO356_05800 0.59 -0.2
1,289,058 - AO356_05800 0.59 -0.8
1,289,076 - AO356_05800 0.62 +0.2
1,289,202 - AO356_05800 0.84 -0.3
1,289,309 + +0.9
1,289,310 - +0.9
1,289,446 + -0.3
1,289,560 + AO356_05805 0.23 -0.1
1,289,560 + AO356_05805 0.23 +1.3
1,289,560 + AO356_05805 0.23 +0.1
1,289,561 - AO356_05805 0.23 -0.1

Or see this region's nucleotide sequence