Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04340 and AO356_04345 are separated by 318 nucleotides AO356_04345 and AO356_04350 are separated by 12 nucleotides AO356_04350 and AO356_04355 are separated by 32 nucleotides AO356_04355 and AO356_04360 are separated by 135 nucleotides
AO356_04340: AO356_04340 - MFS transporter, at 987,650 to 988,936
_04340
AO356_04345: AO356_04345 - hypothetical protein, at 989,255 to 989,797
_04345
AO356_04350: AO356_04350 - glutamine amidotransferase, at 989,810 to 990,586
_04350
AO356_04355: AO356_04355 - MFS transporter, at 990,619 to 991,116
_04355
AO356_04360: AO356_04360 - peptidase S9, at 991,252 to 993,306
_04360
Position (kb) 989
990
991 Strain fitness (log2 ratio) -2
-1
0
1
2 at 988.955 kb on + strand at 988.955 kb on + strand at 988.955 kb on + strand at 988.955 kb on + strand at 988.956 kb on - strand at 988.956 kb on - strand at 988.956 kb on - strand at 989.036 kb on - strand at 989.145 kb on + strand at 989.145 kb on + strand at 989.145 kb on + strand at 989.145 kb on + strand at 989.146 kb on - strand at 989.146 kb on - strand at 989.146 kb on - strand at 989.146 kb on - strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.160 kb on + strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.161 kb on - strand at 989.180 kb on + strand at 989.180 kb on + strand at 989.181 kb on - strand at 989.181 kb on - strand at 989.181 kb on - strand at 989.219 kb on + strand at 989.220 kb on - strand at 989.220 kb on - strand at 989.421 kb on + strand, within AO356_04345 at 989.493 kb on + strand, within AO356_04345 at 989.493 kb on + strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.494 kb on - strand, within AO356_04345 at 989.716 kb on - strand, within AO356_04345 at 989.780 kb on + strand at 989.780 kb on + strand at 989.781 kb on - strand at 989.781 kb on - strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.784 kb on + strand at 989.785 kb on - strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.797 kb on + strand at 989.798 kb on - strand at 989.798 kb on - strand at 989.798 kb on - strand at 989.811 kb on + strand at 990.039 kb on + strand, within AO356_04350 at 990.138 kb on - strand, within AO356_04350 at 990.225 kb on + strand, within AO356_04350 at 990.355 kb on + strand, within AO356_04350 at 990.366 kb on - strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.465 kb on + strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.466 kb on - strand, within AO356_04350 at 990.575 kb on + strand at 990.576 kb on - strand at 990.620 kb on + strand at 990.620 kb on + strand at 990.620 kb on + strand at 990.621 kb on - strand at 990.621 kb on - strand at 990.819 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 990.843 kb on - strand, within AO356_04355 at 991.070 kb on + strand at 991.091 kb on + strand at 991.092 kb on - strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.140 kb on + strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.141 kb on - strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.142 kb on + strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.143 kb on - strand at 991.231 kb on + strand at 991.231 kb on + strand at 991.232 kb on - strand at 991.232 kb on - strand at 991.232 kb on - strand at 991.260 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.358 kb on - strand at 991.378 kb on + strand at 991.378 kb on + strand at 991.378 kb on + strand at 991.379 kb on - strand at 991.379 kb on - strand at 991.379 kb on - strand at 991.489 kb on + strand, within AO356_04360 at 991.490 kb on - strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.495 kb on + strand, within AO356_04360 at 991.496 kb on - strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.498 kb on + strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360 at 991.499 kb on - strand, within AO356_04360
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 988,955 + +1.0 988,955 + -0.0 988,955 + +1.0 988,955 + -0.8 988,956 - -0.1 988,956 - -1.3 988,956 - +0.3 989,036 - +1.2 989,145 + -0.2 989,145 + -1.6 989,145 + -0.8 989,145 + +0.0 989,146 - +0.0 989,146 - +1.1 989,146 - -0.1 989,146 - -1.1 989,160 + -0.4 989,160 + -0.2 989,160 + -0.6 989,160 + -0.8 989,160 + +0.1 989,160 + -0.9 989,160 + -1.8 989,160 + -0.9 989,160 + +1.4 989,160 + -0.4 989,160 + -0.2 989,160 + -1.1 989,161 - +0.4 989,161 - +1.8 989,161 - +0.4 989,161 - -0.4 989,161 - +1.3 989,161 - -2.1 989,180 + -0.7 989,180 + -0.5 989,181 - -0.8 989,181 - +0.6 989,181 - -0.2 989,219 + +0.7 989,220 - -0.6 989,220 - +0.0 989,421 + AO356_04345 0.31 +1.1 989,493 + AO356_04345 0.44 -1.2 989,493 + AO356_04345 0.44 +1.6 989,494 - AO356_04345 0.44 +0.8 989,494 - AO356_04345 0.44 -0.6 989,494 - AO356_04345 0.44 +2.2 989,494 - AO356_04345 0.44 -0.2 989,716 - AO356_04345 0.85 -1.2 989,780 + -0.5 989,780 + +0.3 989,781 - +1.0 989,781 - -0.8 989,784 + -0.5 989,784 + -1.3 989,784 + +0.5 989,784 + +0.2 989,784 + +0.1 989,785 - -0.1 989,797 + -0.3 989,797 + +1.2 989,797 + -1.6 989,797 + +1.2 989,797 + +0.7 989,798 - +1.4 989,798 - -1.5 989,798 - -1.3 989,811 + -0.2 990,039 + AO356_04350 0.29 -0.8 990,138 - AO356_04350 0.42 +0.5 990,225 + AO356_04350 0.53 +0.5 990,355 + AO356_04350 0.70 -0.7 990,366 - AO356_04350 0.72 -0.1 990,465 + AO356_04350 0.84 +1.1 990,465 + AO356_04350 0.84 -1.4 990,465 + AO356_04350 0.84 -1.1 990,465 + AO356_04350 0.84 -0.1 990,465 + AO356_04350 0.84 +0.4 990,465 + AO356_04350 0.84 +0.5 990,465 + AO356_04350 0.84 +0.1 990,465 + AO356_04350 0.84 +0.6 990,465 + AO356_04350 0.84 +0.4 990,466 - AO356_04350 0.84 -0.2 990,466 - AO356_04350 0.84 +0.1 990,466 - AO356_04350 0.84 +0.5 990,466 - AO356_04350 0.84 +0.1 990,466 - AO356_04350 0.84 +0.7 990,575 + -0.2 990,576 - +0.8 990,620 + -0.4 990,620 + +0.0 990,620 + +1.8 990,621 - +1.4 990,621 - -1.1 990,819 - AO356_04355 0.40 -0.6 990,843 - AO356_04355 0.45 +0.3 990,843 - AO356_04355 0.45 -0.4 990,843 - AO356_04355 0.45 +0.3 991,070 + +0.3 991,091 + -0.6 991,092 - +1.2 991,140 + +0.4 991,140 + +0.1 991,140 + +1.8 991,140 + -0.6 991,140 + +0.4 991,140 + +2.0 991,141 - -0.2 991,141 - -0.1 991,141 - +0.5 991,141 - -0.6 991,142 + +0.8 991,142 + -0.1 991,142 + +1.5 991,142 + +0.0 991,142 + +0.5 991,143 - +0.5 991,143 - -1.5 991,143 - -1.4 991,143 - -1.1 991,143 - +1.2 991,143 - +1.1 991,143 - -2.1 991,143 - -1.4 991,143 - +0.9 991,143 - +1.1 991,143 - +0.4 991,231 + +0.5 991,231 + -0.0 991,232 - +0.3 991,232 - -0.7 991,232 - +0.2 991,260 - -0.8 991,358 - +1.1 991,358 - +0.1 991,358 - +0.2 991,358 - +2.4 991,378 + -0.0 991,378 + -1.5 991,378 + +0.1 991,379 - -0.6 991,379 - -1.1 991,379 - +0.4 991,489 + AO356_04360 0.12 -1.7 991,490 - AO356_04360 0.12 -1.9 991,495 + AO356_04360 0.12 -0.2 991,495 + AO356_04360 0.12 +0.9 991,495 + AO356_04360 0.12 -2.3 991,495 + AO356_04360 0.12 -0.1 991,495 + AO356_04360 0.12 +1.2 991,496 - AO356_04360 0.12 -0.1 991,498 + AO356_04360 0.12 +0.6 991,498 + AO356_04360 0.12 -0.9 991,498 + AO356_04360 0.12 +1.4 991,499 - AO356_04360 0.12 +0.3 991,499 - AO356_04360 0.12 -1.7 991,499 - AO356_04360 0.12 -1.2 991,499 - AO356_04360 0.12 -0.1 991,499 - AO356_04360 0.12 +0.1
Or see this region's nucleotide sequence