Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04200 and AO356_04205 are separated by 279 nucleotides AO356_04205 and AO356_04210 are separated by 234 nucleotides
AO356_04200: AO356_04200 - ShlB family hemolysin secretion/activation protein, at 953,488 to 955,194
_04200
AO356_04205: AO356_04205 - hypothetical protein, at 955,474 to 955,749
_04205
AO356_04210: AO356_04210 - RNA helicase, at 955,984 to 957,330
_04210
Position (kb) 955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.707 kb on - strand, within AO356_04200 at 954.800 kb on + strand, within AO356_04200 at 954.800 kb on + strand, within AO356_04200 at 954.800 kb on + strand, within AO356_04200 at 954.801 kb on - strand, within AO356_04200 at 954.801 kb on - strand, within AO356_04200 at 954.833 kb on + strand, within AO356_04200 at 954.833 kb on + strand, within AO356_04200 at 954.833 kb on + strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.896 kb on + strand, within AO356_04200 at 954.896 kb on + strand, within AO356_04200 at 954.897 kb on - strand, within AO356_04200 at 954.897 kb on - strand, within AO356_04200 at 954.897 kb on - strand, within AO356_04200 at 955.268 kb on + strand at 955.269 kb on - strand at 955.269 kb on - strand at 955.289 kb on + strand at 955.289 kb on + strand at 955.290 kb on - strand at 955.290 kb on - strand at 955.290 kb on - strand at 955.292 kb on + strand at 955.292 kb on + strand at 955.292 kb on + strand at 955.292 kb on + strand at 955.293 kb on - strand at 955.293 kb on - strand at 955.369 kb on + strand at 955.402 kb on - strand at 955.442 kb on - strand at 955.459 kb on + strand at 955.459 kb on + strand at 955.460 kb on - strand at 955.460 kb on - strand at 955.460 kb on - strand at 955.686 kb on + strand, within AO356_04205 at 955.686 kb on + strand, within AO356_04205 at 955.686 kb on + strand, within AO356_04205 at 955.789 kb on + strand at 955.789 kb on + strand at 955.790 kb on - strand at 955.790 kb on - strand at 955.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 954,550 + AO356_04200 0.62 +0.6 954,550 + AO356_04200 0.62 -0.2 954,550 + AO356_04200 0.62 +0.9 954,550 + AO356_04200 0.62 +1.7 954,550 + AO356_04200 0.62 +0.3 954,551 - AO356_04200 0.62 -0.7 954,551 - AO356_04200 0.62 +0.4 954,551 - AO356_04200 0.62 -0.1 954,551 - AO356_04200 0.62 +1.4 954,707 - AO356_04200 0.71 -0.3 954,800 + AO356_04200 0.77 +0.3 954,800 + AO356_04200 0.77 +1.1 954,800 + AO356_04200 0.77 +0.1 954,801 - AO356_04200 0.77 -0.4 954,801 - AO356_04200 0.77 +0.1 954,833 + AO356_04200 0.79 +1.3 954,833 + AO356_04200 0.79 +0.7 954,833 + AO356_04200 0.79 -1.0 954,834 - AO356_04200 0.79 -0.3 954,834 - AO356_04200 0.79 +0.6 954,834 - AO356_04200 0.79 -0.4 954,834 - AO356_04200 0.79 -1.3 954,834 - AO356_04200 0.79 -0.1 954,834 - AO356_04200 0.79 -1.0 954,896 + AO356_04200 0.82 -0.0 954,896 + AO356_04200 0.82 +0.0 954,897 - AO356_04200 0.83 +0.1 954,897 - AO356_04200 0.83 +0.6 954,897 - AO356_04200 0.83 +0.1 955,268 + +1.2 955,269 - -2.1 955,269 - +0.0 955,289 + -1.9 955,289 + +1.0 955,290 - -1.0 955,290 - +0.6 955,290 - -0.1 955,292 + +0.5 955,292 + +1.9 955,292 + +0.6 955,292 + -1.3 955,293 - +1.1 955,293 - -1.8 955,369 + +0.1 955,402 - +0.4 955,442 - +1.5 955,459 + +0.8 955,459 + +0.6 955,460 - +1.0 955,460 - +1.0 955,460 - +0.3 955,686 + AO356_04205 0.77 +1.9 955,686 + AO356_04205 0.77 -1.0 955,686 + AO356_04205 0.77 -0.2 955,789 + -0.5 955,789 + +1.0 955,790 - +1.2 955,790 - +0.6 955,790 - +0.4
Or see this region's nucleotide sequence