Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03300

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03290 and AO356_03295 are separated by 117 nucleotidesAO356_03295 and AO356_03300 are separated by 64 nucleotidesAO356_03300 and AO356_03305 are separated by 191 nucleotidesAO356_03305 and AO356_03310 are separated by 204 nucleotides AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543 _03290 AO356_03295: AO356_03295 - transcriptional regulator, at 729,661 to 730,359 _03295 AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075 _03300 AO356_03305: AO356_03305 - ATPase, at 733,267 to 733,812 _03305 AO356_03310: AO356_03310 - potassium-transporting ATPase subunit B, at 734,017 to 736,071 _03310 Position (kb) 730 731 732 733 734Strain fitness (log2 ratio) -2 -1 0 1 2 3at 729.463 kb on + strandat 729.464 kb on - strandat 729.464 kb on - strandat 729.524 kb on - strandat 729.541 kb on + strandat 729.541 kb on + strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.542 kb on - strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.656 kb on + strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.657 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.663 kb on - strandat 729.779 kb on + strand, within AO356_03295at 729.779 kb on + strand, within AO356_03295at 729.780 kb on - strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.881 kb on + strand, within AO356_03295at 729.882 kb on - strand, within AO356_03295at 730.059 kb on - strand, within AO356_03295at 730.274 kb on + strand, within AO356_03295at 730.274 kb on + strand, within AO356_03295at 730.275 kb on - strand, within AO356_03295at 730.410 kb on + strandat 730.410 kb on + strandat 730.410 kb on + strandat 730.410 kb on + strandat 730.411 kb on - strandat 730.411 kb on - strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.605 kb on + strandat 730.606 kb on - strandat 730.606 kb on - strandat 730.612 kb on + strandat 730.613 kb on - strandat 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.791 kb on + strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.792 kb on - strand, within AO356_03300at 730.959 kb on + strand, within AO356_03300at 730.959 kb on + strand, within AO356_03300at 730.959 kb on + strand, within AO356_03300at 730.960 kb on - strand, within AO356_03300at 731.471 kb on + strand, within AO356_03300at 731.471 kb on + strand, within AO356_03300at 731.471 kb on + strand, within AO356_03300at 731.472 kb on - strand, within AO356_03300at 731.472 kb on - strand, within AO356_03300at 731.472 kb on - strand, within AO356_03300at 731.472 kb on - strand, within AO356_03300at 731.830 kb on + strand, within AO356_03300at 731.830 kb on + strand, within AO356_03300at 731.831 kb on - strand, within AO356_03300at 731.831 kb on - strand, within AO356_03300at 731.831 kb on - strand, within AO356_03300at 731.907 kb on + strand, within AO356_03300at 731.907 kb on + strand, within AO356_03300at 731.907 kb on + strand, within AO356_03300at 731.907 kb on + strand, within AO356_03300at 731.907 kb on + strand, within AO356_03300at 731.908 kb on - strand, within AO356_03300at 732.495 kb on + strand, within AO356_03300at 732.495 kb on + strand, within AO356_03300at 732.495 kb on + strand, within AO356_03300at 732.495 kb on + strand, within AO356_03300at 732.495 kb on + strand, within AO356_03300at 732.496 kb on - strand, within AO356_03300at 732.496 kb on - strand, within AO356_03300at 732.623 kb on + strand, within AO356_03300at 732.669 kb on + strand, within AO356_03300at 732.670 kb on - strand, within AO356_03300at 732.969 kb on + strandat 732.969 kb on + strandat 732.969 kb on + strandat 732.970 kb on - strandat 732.970 kb on - strandat 732.970 kb on - strandat 733.097 kb on + strandat 733.098 kb on - strandat 733.098 kb on - strandat 733.143 kb on + strandat 733.144 kb on - strandat 733.144 kb on - strandat 733.269 kb on - strandat 733.561 kb on - strand, within AO356_03305at 733.745 kb on + strand, within AO356_03305at 733.777 kb on + strandat 733.778 kb on - strandat 733.778 kb on - strandat 734.046 kb on + strandat 734.046 kb on + strandat 734.047 kb on - strandat 734.047 kb on - strandat 734.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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729,463 + +0.1
729,464 - -0.1
729,464 - -0.1
729,524 - -0.3
729,541 + -0.2
729,541 + +1.7
729,542 - +1.7
729,542 - +0.3
729,542 - -2.0
729,542 - +0.7
729,656 + +0.1
729,656 + -1.1
729,656 + -0.6
729,656 + -1.2
729,656 + -0.5
729,656 + -0.8
729,657 - +0.2
729,657 - -0.2
729,657 - -0.0
729,657 - -0.5
729,657 - -1.1
729,657 - -0.1
729,663 - -0.1
729,663 - -0.6
729,663 - +2.8
729,663 - +1.4
729,663 - -1.5
729,663 - +0.8
729,779 + AO356_03295 0.17 -1.2
729,779 + AO356_03295 0.17 +1.1
729,780 - AO356_03295 0.17 -0.7
729,881 + AO356_03295 0.31 -2.1
729,881 + AO356_03295 0.31 -0.4
729,881 + AO356_03295 0.31 +0.9
729,881 + AO356_03295 0.31 -1.0
729,882 - AO356_03295 0.32 +0.7
730,059 - AO356_03295 0.57 -2.0
730,274 + AO356_03295 0.88 +0.6
730,274 + AO356_03295 0.88 -0.2
730,275 - AO356_03295 0.88 -0.6
730,410 + +1.9
730,410 + -0.3
730,410 + -0.7
730,410 + -0.1
730,411 - -1.4
730,411 - +0.8
730,605 + -0.2
730,605 + +0.1
730,605 + -1.4
730,605 + -0.4
730,605 + -2.0
730,605 + -1.8
730,606 - +0.7
730,606 - +1.1
730,612 + +0.5
730,613 - +0.4
730,791 + AO356_03300 0.14 +1.3
730,791 + AO356_03300 0.14 +0.0
730,791 + AO356_03300 0.14 -1.0
730,791 + AO356_03300 0.14 +0.2
730,791 + AO356_03300 0.14 -0.5
730,791 + AO356_03300 0.14 +1.0
730,791 + AO356_03300 0.14 -0.3
730,791 + AO356_03300 0.14 -0.9
730,792 - AO356_03300 0.14 +0.5
730,792 - AO356_03300 0.14 -1.2
730,792 - AO356_03300 0.14 +0.4
730,792 - AO356_03300 0.14 +0.1
730,792 - AO356_03300 0.14 -0.6
730,792 - AO356_03300 0.14 +1.0
730,792 - AO356_03300 0.14 -0.8
730,792 - AO356_03300 0.14 -2.0
730,792 - AO356_03300 0.14 +0.8
730,792 - AO356_03300 0.14 -0.3
730,792 - AO356_03300 0.14 +0.0
730,792 - AO356_03300 0.14 -1.9
730,792 - AO356_03300 0.14 +1.1
730,792 - AO356_03300 0.14 +1.1
730,792 - AO356_03300 0.14 -2.0
730,959 + AO356_03300 0.20 -0.4
730,959 + AO356_03300 0.20 +0.1
730,959 + AO356_03300 0.20 -0.3
730,960 - AO356_03300 0.20 +2.1
731,471 + AO356_03300 0.39 +0.4
731,471 + AO356_03300 0.39 -0.5
731,471 + AO356_03300 0.39 +0.0
731,472 - AO356_03300 0.40 +0.3
731,472 - AO356_03300 0.40 -0.3
731,472 - AO356_03300 0.40 +2.0
731,472 - AO356_03300 0.40 -0.4
731,830 + AO356_03300 0.53 -2.2
731,830 + AO356_03300 0.53 -0.8
731,831 - AO356_03300 0.53 -0.0
731,831 - AO356_03300 0.53 +0.0
731,831 - AO356_03300 0.53 -1.2
731,907 + AO356_03300 0.56 -0.4
731,907 + AO356_03300 0.56 -0.7
731,907 + AO356_03300 0.56 -0.1
731,907 + AO356_03300 0.56 +0.4
731,907 + AO356_03300 0.56 +0.3
731,908 - AO356_03300 0.56 -0.7
732,495 + AO356_03300 0.78 +0.6
732,495 + AO356_03300 0.78 -0.2
732,495 + AO356_03300 0.78 +0.5
732,495 + AO356_03300 0.78 -0.7
732,495 + AO356_03300 0.78 -0.7
732,496 - AO356_03300 0.78 +0.4
732,496 - AO356_03300 0.78 +0.5
732,623 + AO356_03300 0.83 +0.7
732,669 + AO356_03300 0.85 -0.7
732,670 - AO356_03300 0.85 +0.3
732,969 + -0.1
732,969 + -1.1
732,969 + -0.1
732,970 - +1.5
732,970 - +1.4
732,970 - +0.4
733,097 + +0.6
733,098 - +0.3
733,098 - +0.1
733,143 + +1.1
733,144 - +2.1
733,144 - +0.3
733,269 - +0.7
733,561 - AO356_03305 0.54 +0.0
733,745 + AO356_03305 0.88 +0.9
733,777 + +0.5
733,778 - +0.3
733,778 - -0.7
734,046 + -0.6
734,046 + -0.2
734,047 - -1.3
734,047 - +0.9
734,047 - +1.5

Or see this region's nucleotide sequence