Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03235 and AO356_03240 are separated by 34 nucleotides AO356_03240 and AO356_03245 are separated by 8 nucleotides AO356_03245 and AO356_03250 are separated by 249 nucleotides AO356_03250 and AO356_03255 are separated by 100 nucleotides
AO356_03235: AO356_03235 - ABC transporter permease, at 717,165 to 719,669
_03235
AO356_03240: AO356_03240 - transcription elongation factor GreB, at 719,704 to 720,201
_03240
AO356_03245: AO356_03245 - hypothetical protein, at 720,210 to 720,518
_03245
AO356_03250: AO356_03250 - DoxX family protein, at 720,768 to 721,202
_03250
AO356_03255: AO356_03255 - glycosylase, at 721,303 to 722,724
_03255
Position (kb) 720
721 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.304 kb on + strand, within AO356_03235 at 719.304 kb on + strand, within AO356_03235 at 719.304 kb on + strand, within AO356_03235 at 719.305 kb on - strand, within AO356_03235 at 719.305 kb on - strand, within AO356_03235 at 719.527 kb on - strand at 719.569 kb on + strand at 719.569 kb on + strand at 719.570 kb on - strand at 719.653 kb on + strand at 719.653 kb on + strand at 719.653 kb on + strand at 719.654 kb on - strand at 719.654 kb on - strand at 719.654 kb on - strand at 719.670 kb on + strand at 719.670 kb on + strand at 719.670 kb on + strand at 719.670 kb on + strand at 719.670 kb on + strand at 719.671 kb on - strand at 719.671 kb on - strand at 719.671 kb on - strand at 719.671 kb on - strand at 719.671 kb on - strand at 719.873 kb on - strand, within AO356_03240 at 719.873 kb on - strand, within AO356_03240 at 719.873 kb on - strand, within AO356_03240 at 719.873 kb on - strand, within AO356_03240 at 719.878 kb on + strand, within AO356_03240 at 719.879 kb on - strand, within AO356_03240 at 719.986 kb on + strand, within AO356_03240 at 720.038 kb on - strand, within AO356_03240 at 720.175 kb on + strand at 720.175 kb on + strand at 720.176 kb on - strand at 720.176 kb on - strand at 720.410 kb on - strand, within AO356_03245 at 720.410 kb on - strand, within AO356_03245 at 720.495 kb on + strand at 720.495 kb on + strand at 720.495 kb on + strand at 720.495 kb on + strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.616 kb on - strand at 720.652 kb on + strand at 720.652 kb on + strand at 720.652 kb on + strand at 720.653 kb on - strand at 720.653 kb on - strand at 720.653 kb on - strand at 720.660 kb on + strand at 720.660 kb on + strand at 720.684 kb on + strand at 720.685 kb on - strand at 720.723 kb on + strand at 720.736 kb on + strand at 720.736 kb on + strand at 720.736 kb on + strand at 720.737 kb on - strand at 720.737 kb on - strand at 720.827 kb on + strand, within AO356_03250 at 720.828 kb on - strand, within AO356_03250 at 720.860 kb on - strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.022 kb on - strand, within AO356_03250 at 721.122 kb on + strand, within AO356_03250 at 721.122 kb on + strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.202 kb on + strand at 721.202 kb on + strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.221 kb on + strand at 721.221 kb on + strand at 721.222 kb on - strand at 721.222 kb on - strand at 721.222 kb on - strand at 721.225 kb on - strand at 721.309 kb on - strand at 721.370 kb on + strand at 721.370 kb on + strand at 721.371 kb on - strand at 721.371 kb on - strand at 721.371 kb on - strand at 721.373 kb on + strand at 721.374 kb on - strand at 721.374 kb on - strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.378 kb on - strand at 721.378 kb on - strand at 721.386 kb on + strand at 721.387 kb on - strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.414 kb on + strand at 721.414 kb on + strand at 721.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 719,304 + AO356_03235 0.85 -0.6 719,304 + AO356_03235 0.85 +2.5 719,304 + AO356_03235 0.85 +1.2 719,305 - AO356_03235 0.85 +1.2 719,305 - AO356_03235 0.85 +0.6 719,527 - +0.2 719,569 + +0.4 719,569 + -0.9 719,570 - -1.6 719,653 + +0.2 719,653 + -0.4 719,653 + -1.4 719,654 - -0.2 719,654 - +0.0 719,654 - -0.3 719,670 + -1.0 719,670 + +0.6 719,670 + +1.3 719,670 + -1.5 719,670 + -0.5 719,671 - +0.5 719,671 - +0.4 719,671 - -0.0 719,671 - +0.5 719,671 - -0.3 719,873 - AO356_03240 0.34 -0.3 719,873 - AO356_03240 0.34 -2.3 719,873 - AO356_03240 0.34 -0.3 719,873 - AO356_03240 0.34 -0.1 719,878 + AO356_03240 0.35 -0.6 719,879 - AO356_03240 0.35 +0.1 719,986 + AO356_03240 0.57 +0.7 720,038 - AO356_03240 0.67 -1.1 720,175 + -1.3 720,175 + -0.1 720,176 - -0.3 720,176 - +1.2 720,410 - AO356_03245 0.65 -0.6 720,410 - AO356_03245 0.65 -1.1 720,495 + -0.2 720,495 + +0.4 720,495 + -0.1 720,495 + -1.0 720,496 - +0.8 720,496 - +1.5 720,496 - +0.5 720,496 - +0.2 720,496 - +2.1 720,496 - -1.1 720,496 - +2.0 720,616 - -0.0 720,652 + -2.0 720,652 + +0.9 720,652 + -0.6 720,653 - +0.0 720,653 - +0.9 720,653 - +0.6 720,660 + +0.4 720,660 + +0.4 720,684 + +0.8 720,685 - +1.4 720,723 + +1.1 720,736 + -0.5 720,736 + +0.5 720,736 + +1.4 720,737 - +0.7 720,737 - -0.9 720,827 + AO356_03250 0.14 +0.1 720,828 - AO356_03250 0.14 +1.0 720,860 - AO356_03250 0.21 +1.1 721,021 + AO356_03250 0.58 +0.7 721,021 + AO356_03250 0.58 +0.4 721,021 + AO356_03250 0.58 +0.6 721,022 - AO356_03250 0.58 -1.7 721,122 + AO356_03250 0.81 +1.0 721,122 + AO356_03250 0.81 -0.9 721,123 - AO356_03250 0.82 +0.0 721,123 - AO356_03250 0.82 +2.0 721,123 - AO356_03250 0.82 +1.0 721,123 - AO356_03250 0.82 -0.3 721,202 + -1.2 721,202 + +1.1 721,203 - -0.6 721,203 - +1.2 721,203 - -1.3 721,203 - +0.6 721,221 + -0.5 721,221 + -0.1 721,222 - -0.3 721,222 - +0.7 721,222 - -0.2 721,225 - +0.3 721,309 - -0.6 721,370 + -0.2 721,370 + -1.1 721,371 - -1.3 721,371 - +0.6 721,371 - -0.4 721,373 + -0.2 721,374 - -0.1 721,374 - -0.3 721,377 + -1.0 721,377 + -0.1 721,377 + +0.5 721,377 + +0.2 721,377 + -0.8 721,378 - -0.4 721,378 - -0.3 721,386 + -0.2 721,387 - +0.8 721,389 + -0.1 721,389 + -0.9 721,389 + -0.8 721,389 + -0.7 721,390 - +0.4 721,390 - +0.0 721,390 - -0.7 721,390 - -0.5 721,390 - +0.1 721,390 - -1.0 721,394 + -0.6 721,394 + -0.9 721,394 + -0.5 721,394 + +0.8 721,394 + -0.4 721,394 + +1.0 721,395 - -0.8 721,395 - -0.0 721,395 - -0.4 721,395 - -0.9 721,395 - +0.7 721,414 + +1.1 721,414 + +0.2 721,415 - +0.3
Or see this region's nucleotide sequence