Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02810

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02800 and AO356_02805 are separated by 2 nucleotidesAO356_02805 and AO356_02810 are separated by 64 nucleotidesAO356_02810 and AO356_02815 are separated by 25 nucleotidesAO356_02815 and AO356_02820 are separated by 126 nucleotides AO356_02800: AO356_02800 - transporter, at 617,171 to 617,995 _02800 AO356_02805: AO356_02805 - CrfX protein, at 617,998 to 618,243 _02805 AO356_02810: AO356_02810 - CmaX protein, at 618,308 to 619,303 _02810 AO356_02815: AO356_02815 - ribonuclease activity regulator protein RraA, at 619,329 to 619,820 _02815 AO356_02820: AO356_02820 - EstX protein, at 619,947 to 620,936 _02820 Position (kb) 618 619 620Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 617.482 kb on + strand, within AO356_02800at 617.483 kb on - strand, within AO356_02800at 617.483 kb on - strand, within AO356_02800at 617.491 kb on + strand, within AO356_02800at 617.492 kb on - strand, within AO356_02800at 617.492 kb on - strand, within AO356_02800at 617.533 kb on - strand, within AO356_02800at 617.640 kb on + strand, within AO356_02800at 617.640 kb on + strand, within AO356_02800at 617.721 kb on - strand, within AO356_02800at 617.934 kb on - strandat 618.024 kb on + strand, within AO356_02805at 618.157 kb on + strand, within AO356_02805at 618.157 kb on + strand, within AO356_02805at 618.243 kb on + strandat 618.243 kb on + strandat 618.243 kb on + strandat 618.244 kb on - strandat 618.427 kb on + strand, within AO356_02810at 618.428 kb on - strand, within AO356_02810at 618.431 kb on + strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.432 kb on - strand, within AO356_02810at 618.615 kb on + strand, within AO356_02810at 618.751 kb on + strand, within AO356_02810at 618.753 kb on + strand, within AO356_02810at 618.753 kb on + strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.754 kb on - strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.840 kb on + strand, within AO356_02810at 618.841 kb on - strand, within AO356_02810at 618.841 kb on - strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.850 kb on + strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.851 kb on - strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.852 kb on + strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 618.853 kb on - strand, within AO356_02810at 619.385 kb on - strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.390 kb on + strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.391 kb on - strand, within AO356_02815at 619.540 kb on + strand, within AO356_02815at 619.540 kb on + strand, within AO356_02815at 619.540 kb on + strand, within AO356_02815at 619.541 kb on - strand, within AO356_02815at 619.810 kb on + strandat 619.810 kb on + strandat 619.810 kb on + strandat 619.811 kb on - strandat 619.811 kb on - strandat 619.811 kb on - strandat 619.811 kb on - strandat 619.895 kb on + strandat 619.901 kb on - strandat 620.285 kb on + strand, within AO356_02820at 620.285 kb on + strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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617,482 + AO356_02800 0.38 +0.5
617,483 - AO356_02800 0.38 +1.3
617,483 - AO356_02800 0.38 +1.4
617,491 + AO356_02800 0.39 -0.7
617,492 - AO356_02800 0.39 +0.1
617,492 - AO356_02800 0.39 +1.1
617,533 - AO356_02800 0.44 +0.2
617,640 + AO356_02800 0.57 +0.1
617,640 + AO356_02800 0.57 -0.4
617,721 - AO356_02800 0.67 -1.3
617,934 - -0.5
618,024 + AO356_02805 0.11 -1.1
618,157 + AO356_02805 0.65 -0.4
618,157 + AO356_02805 0.65 +0.1
618,243 + -0.6
618,243 + +0.1
618,243 + -0.8
618,244 - +0.2
618,427 + AO356_02810 0.12 +0.6
618,428 - AO356_02810 0.12 -1.2
618,431 + AO356_02810 0.12 +0.2
618,432 - AO356_02810 0.12 -0.3
618,432 - AO356_02810 0.12 -0.0
618,432 - AO356_02810 0.12 +0.3
618,432 - AO356_02810 0.12 +0.5
618,615 + AO356_02810 0.31 +0.3
618,751 + AO356_02810 0.44 -1.1
618,753 + AO356_02810 0.45 +0.6
618,753 + AO356_02810 0.45 -1.0
618,754 - AO356_02810 0.45 +0.3
618,754 - AO356_02810 0.45 -1.1
618,754 - AO356_02810 0.45 -2.5
618,840 + AO356_02810 0.53 +1.6
618,840 + AO356_02810 0.53 -0.2
618,840 + AO356_02810 0.53 +2.4
618,840 + AO356_02810 0.53 -0.9
618,841 - AO356_02810 0.54 -0.7
618,841 - AO356_02810 0.54 -1.3
618,850 + AO356_02810 0.54 -0.3
618,850 + AO356_02810 0.54 +1.5
618,850 + AO356_02810 0.54 +1.1
618,851 - AO356_02810 0.55 -1.3
618,851 - AO356_02810 0.55 +1.6
618,851 - AO356_02810 0.55 +0.9
618,852 + AO356_02810 0.55 -0.8
618,852 + AO356_02810 0.55 -0.7
618,852 + AO356_02810 0.55 +0.4
618,852 + AO356_02810 0.55 +0.5
618,852 + AO356_02810 0.55 +0.1
618,852 + AO356_02810 0.55 -0.9
618,852 + AO356_02810 0.55 -1.7
618,852 + AO356_02810 0.55 +0.1
618,852 + AO356_02810 0.55 -0.0
618,853 - AO356_02810 0.55 -0.7
618,853 - AO356_02810 0.55 +0.3
618,853 - AO356_02810 0.55 -1.0
618,853 - AO356_02810 0.55 -0.4
618,853 - AO356_02810 0.55 +0.8
618,853 - AO356_02810 0.55 -0.7
619,385 - AO356_02815 0.11 +1.2
619,390 + AO356_02815 0.12 -1.0
619,390 + AO356_02815 0.12 -1.1
619,390 + AO356_02815 0.12 +0.7
619,390 + AO356_02815 0.12 -0.4
619,390 + AO356_02815 0.12 -1.1
619,391 - AO356_02815 0.13 +1.5
619,391 - AO356_02815 0.13 -0.2
619,391 - AO356_02815 0.13 +0.8
619,391 - AO356_02815 0.13 +0.1
619,391 - AO356_02815 0.13 -0.1
619,391 - AO356_02815 0.13 -0.5
619,540 + AO356_02815 0.43 -1.0
619,540 + AO356_02815 0.43 -0.8
619,540 + AO356_02815 0.43 -0.5
619,541 - AO356_02815 0.43 -1.7
619,810 + -1.4
619,810 + +1.0
619,810 + -0.1
619,811 - -0.8
619,811 - +0.4
619,811 - -2.9
619,811 - -0.0
619,895 + +0.7
619,901 - +1.9
620,285 + AO356_02820 0.34 +1.5
620,285 + AO356_02820 0.34 -0.2
620,286 - AO356_02820 0.34 -1.0
620,286 - AO356_02820 0.34 -0.9
620,286 - AO356_02820 0.34 +0.1

Or see this region's nucleotide sequence