Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02660

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02650 and AO356_02655 are separated by 128 nucleotidesAO356_02655 and AO356_02660 overlap by 4 nucleotidesAO356_02660 and AO356_02665 are separated by 263 nucleotidesAO356_02665 and AO356_02670 are separated by 79 nucleotides AO356_02650: AO356_02650 - type III secretion system protein PrgH, at 582,455 to 583,633 _02650 AO356_02655: AO356_02655 - invasion protein IagB, at 583,762 to 584,226 _02655 AO356_02660: AO356_02660 - invasion protein regulator, at 584,223 to 585,482 _02660 AO356_02665: AO356_02665 - hypothetical protein, at 585,746 to 586,003 _02665 AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189 _02670 Position (kb) 584 585 586Strain fitness (log2 ratio) -2 -1 0 1 2at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.317 kb on + strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.318 kb on - strand, within AO356_02650at 583.671 kb on + strandat 583.671 kb on + strandat 583.672 kb on - strandat 583.672 kb on - strandat 583.859 kb on + strand, within AO356_02655at 583.859 kb on + strand, within AO356_02655at 583.881 kb on + strand, within AO356_02655at 583.881 kb on + strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.882 kb on - strand, within AO356_02655at 583.883 kb on + strand, within AO356_02655at 583.883 kb on + strand, within AO356_02655at 583.884 kb on - strand, within AO356_02655at 584.384 kb on - strand, within AO356_02660at 584.466 kb on - strand, within AO356_02660at 584.722 kb on + strand, within AO356_02660at 584.740 kb on + strand, within AO356_02660at 584.778 kb on + strand, within AO356_02660at 584.779 kb on - strand, within AO356_02660at 584.807 kb on + strand, within AO356_02660at 584.808 kb on - strand, within AO356_02660at 585.151 kb on - strand, within AO356_02660at 585.212 kb on - strand, within AO356_02660at 585.247 kb on + strand, within AO356_02660at 585.248 kb on - strand, within AO356_02660at 585.248 kb on - strand, within AO356_02660at 585.248 kb on - strand, within AO356_02660at 585.251 kb on + strand, within AO356_02660at 585.252 kb on - strand, within AO356_02660at 585.252 kb on - strand, within AO356_02660at 585.252 kb on - strand, within AO356_02660at 585.357 kb on + strandat 585.358 kb on - strandat 585.482 kb on + strandat 585.482 kb on + strandat 585.483 kb on - strandat 585.498 kb on + strandat 585.568 kb on + strandat 585.569 kb on - strandat 585.608 kb on + strandat 585.666 kb on + strandat 585.673 kb on + strandat 585.715 kb on - strandat 585.736 kb on + strandat 585.737 kb on - strandat 585.754 kb on + strandat 585.761 kb on + strandat 585.762 kb on - strandat 585.762 kb on - strandat 585.763 kb on + strandat 585.763 kb on + strandat 585.764 kb on - strandat 585.764 kb on - strandat 585.764 kb on - strandat 585.764 kb on - strandat 585.785 kb on + strand, within AO356_02665at 585.785 kb on + strand, within AO356_02665at 585.786 kb on - strand, within AO356_02665at 585.847 kb on + strand, within AO356_02665at 585.848 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.947 kb on - strand, within AO356_02665at 585.980 kb on - strandat 586.063 kb on - strandat 586.084 kb on + strandat 586.109 kb on + strandat 586.145 kb on + strandat 586.162 kb on + strandat 586.276 kb on - strand, within AO356_02670at 586.276 kb on - strand, within AO356_02670at 586.289 kb on - strand, within AO356_02670

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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583,317 + AO356_02650 0.73 -1.3
583,317 + AO356_02650 0.73 -0.3
583,317 + AO356_02650 0.73 -0.0
583,317 + AO356_02650 0.73 -0.9
583,317 + AO356_02650 0.73 -0.8
583,318 - AO356_02650 0.73 -1.8
583,318 - AO356_02650 0.73 +0.3
583,318 - AO356_02650 0.73 -1.2
583,318 - AO356_02650 0.73 -0.6
583,318 - AO356_02650 0.73 -0.4
583,318 - AO356_02650 0.73 -0.2
583,671 + -1.1
583,671 + -1.0
583,672 - -2.2
583,672 - -1.5
583,859 + AO356_02655 0.21 +0.5
583,859 + AO356_02655 0.21 -1.3
583,881 + AO356_02655 0.26 -0.7
583,881 + AO356_02655 0.26 +0.6
583,882 - AO356_02655 0.26 -0.8
583,882 - AO356_02655 0.26 +0.1
583,882 - AO356_02655 0.26 +0.3
583,882 - AO356_02655 0.26 +1.1
583,883 + AO356_02655 0.26 -1.0
583,883 + AO356_02655 0.26 +0.6
583,884 - AO356_02655 0.26 +0.2
584,384 - AO356_02660 0.13 -1.0
584,466 - AO356_02660 0.19 +0.4
584,722 + AO356_02660 0.40 +0.8
584,740 + AO356_02660 0.41 +0.0
584,778 + AO356_02660 0.44 +0.1
584,779 - AO356_02660 0.44 -0.0
584,807 + AO356_02660 0.46 +0.8
584,808 - AO356_02660 0.46 -0.3
585,151 - AO356_02660 0.74 +0.7
585,212 - AO356_02660 0.78 +0.1
585,247 + AO356_02660 0.81 -1.6
585,248 - AO356_02660 0.81 +2.1
585,248 - AO356_02660 0.81 +0.3
585,248 - AO356_02660 0.81 +0.3
585,251 + AO356_02660 0.82 -0.3
585,252 - AO356_02660 0.82 -0.8
585,252 - AO356_02660 0.82 -1.0
585,252 - AO356_02660 0.82 -0.5
585,357 + -1.1
585,358 - -0.1
585,482 + -0.5
585,482 + -1.1
585,483 - +0.3
585,498 + -0.7
585,568 + +0.5
585,569 - +1.1
585,608 + +0.3
585,666 + -1.2
585,673 + -0.3
585,715 - -0.2
585,736 + -1.1
585,737 - -0.1
585,754 + -1.8
585,761 + -1.7
585,762 - -1.8
585,762 - -1.3
585,763 + -0.1
585,763 + -1.4
585,764 - +0.9
585,764 - +0.0
585,764 - -1.3
585,764 - -0.1
585,785 + AO356_02665 0.15 -0.5
585,785 + AO356_02665 0.15 -0.3
585,786 - AO356_02665 0.16 -0.8
585,847 + AO356_02665 0.39 +1.1
585,848 - AO356_02665 0.40 -0.2
585,851 - AO356_02665 0.41 -0.9
585,851 - AO356_02665 0.41 -0.5
585,851 - AO356_02665 0.41 +0.3
585,851 - AO356_02665 0.41 +1.0
585,947 - AO356_02665 0.78 -0.3
585,980 - -1.0
586,063 - +1.3
586,084 + +0.6
586,109 + -1.3
586,145 + +1.4
586,162 + -0.1
586,276 - AO356_02670 0.17 -1.5
586,276 - AO356_02670 0.17 -0.8
586,289 - AO356_02670 0.19 +0.5

Or see this region's nucleotide sequence