Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02470 and AO356_02475 overlap by 8 nucleotides AO356_02475 and AO356_02480 are separated by 221 nucleotides AO356_02480 and AO356_02485 are separated by 94 nucleotides AO356_02485 and AO356_02490 are separated by 76 nucleotides
AO356_02470: AO356_02470 - cytochrome C oxidase Cbb3, at 537,552 to 537,770
_02470
AO356_02475: AO356_02475 - cytochrome biogenesis protein, at 537,763 to 538,446
_02475
AO356_02480: AO356_02480 - coproporphyrinogen III oxidase, at 538,668 to 540,050
_02480
AO356_02485: AO356_02485 - transcriptional regulator, at 540,145 to 540,879
_02485
AO356_02490: AO356_02490 - adenine phosphoribosyltransferase, at 540,956 to 541,504
_02490
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.940 kb on + strand, within AO356_02475 at 537.940 kb on + strand, within AO356_02475 at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.547 kb on + strand at 538.548 kb on - strand at 538.548 kb on - strand at 538.548 kb on - strand at 538.629 kb on + strand at 538.629 kb on + strand at 538.651 kb on - strand at 538.710 kb on + strand at 538.731 kb on + strand at 538.731 kb on + strand at 538.732 kb on - strand at 538.732 kb on - strand at 538.732 kb on - strand at 538.836 kb on + strand, within AO356_02480 at 538.837 kb on - strand, within AO356_02480 at 538.869 kb on + strand, within AO356_02480 at 538.869 kb on + strand, within AO356_02480 at 538.869 kb on + strand, within AO356_02480 at 538.870 kb on - strand, within AO356_02480 at 538.870 kb on - strand, within AO356_02480 at 538.872 kb on + strand, within AO356_02480 at 538.873 kb on - strand, within AO356_02480 at 538.873 kb on - strand, within AO356_02480 at 538.873 kb on - strand, within AO356_02480 at 538.923 kb on + strand, within AO356_02480 at 538.923 kb on + strand, within AO356_02480 at 538.924 kb on - strand, within AO356_02480 at 539.313 kb on + strand, within AO356_02480 at 539.314 kb on - strand, within AO356_02480 at 539.404 kb on - strand, within AO356_02480 at 539.404 kb on - strand, within AO356_02480 at 539.529 kb on + strand, within AO356_02480 at 539.530 kb on - strand, within AO356_02480 at 539.530 kb on - strand, within AO356_02480 at 539.530 kb on - strand, within AO356_02480 at 539.616 kb on + strand, within AO356_02480 at 539.616 kb on + strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.617 kb on - strand, within AO356_02480 at 539.685 kb on + strand, within AO356_02480 at 539.685 kb on + strand, within AO356_02480 at 539.716 kb on - strand, within AO356_02480 at 539.874 kb on + strand, within AO356_02480 at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.044 kb on + strand at 540.093 kb on - strand at 540.115 kb on + strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.116 kb on - strand at 540.366 kb on + strand, within AO356_02485 at 540.367 kb on - strand, within AO356_02485 at 540.530 kb on + strand, within AO356_02485 at 540.531 kb on - strand, within AO356_02485 at 540.606 kb on - strand, within AO356_02485 at 540.736 kb on + strand, within AO356_02485 at 540.793 kb on + strand, within AO356_02485 at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.918 kb on + strand at 540.919 kb on - strand at 540.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 537,940 + AO356_02475 0.26 +1.3 537,940 + AO356_02475 0.26 +2.4 538,547 + -0.7 538,547 + -0.4 538,547 + -1.4 538,547 + -0.9 538,547 + -0.1 538,547 + -0.8 538,547 + -0.0 538,547 + +0.5 538,547 + +0.9 538,548 - +1.0 538,548 - -0.1 538,548 - +0.4 538,629 + -1.0 538,629 + +1.2 538,651 - +0.3 538,710 + +0.1 538,731 + -0.5 538,731 + +0.9 538,732 - -1.7 538,732 - +0.7 538,732 - -1.1 538,836 + AO356_02480 0.12 +0.2 538,837 - AO356_02480 0.12 -2.4 538,869 + AO356_02480 0.15 +0.4 538,869 + AO356_02480 0.15 +0.7 538,869 + AO356_02480 0.15 -0.7 538,870 - AO356_02480 0.15 +0.4 538,870 - AO356_02480 0.15 -0.9 538,872 + AO356_02480 0.15 -0.4 538,873 - AO356_02480 0.15 +0.3 538,873 - AO356_02480 0.15 +1.0 538,873 - AO356_02480 0.15 +0.2 538,923 + AO356_02480 0.18 +0.1 538,923 + AO356_02480 0.18 +0.1 538,924 - AO356_02480 0.19 -2.0 539,313 + AO356_02480 0.47 +0.2 539,314 - AO356_02480 0.47 +0.5 539,404 - AO356_02480 0.53 +0.7 539,404 - AO356_02480 0.53 -0.3 539,529 + AO356_02480 0.62 -1.6 539,530 - AO356_02480 0.62 -1.8 539,530 - AO356_02480 0.62 -0.7 539,530 - AO356_02480 0.62 +0.0 539,616 + AO356_02480 0.69 +0.1 539,616 + AO356_02480 0.69 -1.4 539,617 - AO356_02480 0.69 +0.5 539,617 - AO356_02480 0.69 -0.2 539,617 - AO356_02480 0.69 -1.3 539,617 - AO356_02480 0.69 -0.4 539,685 + AO356_02480 0.74 -0.1 539,685 + AO356_02480 0.74 -1.2 539,716 - AO356_02480 0.76 +0.6 539,874 + AO356_02480 0.87 +0.7 540,006 + -1.0 540,006 + +0.4 540,006 + +1.1 540,007 - -0.6 540,007 - +0.6 540,007 - -1.7 540,044 + +0.6 540,093 - +1.2 540,115 + +0.3 540,116 - +1.7 540,116 - +0.7 540,116 - +0.7 540,116 - -1.0 540,366 + AO356_02485 0.30 +0.3 540,367 - AO356_02485 0.30 -0.0 540,530 + AO356_02485 0.52 -1.7 540,531 - AO356_02485 0.53 -1.6 540,606 - AO356_02485 0.63 -1.4 540,736 + AO356_02485 0.80 -0.8 540,793 + AO356_02485 0.88 -0.3 540,918 + +1.1 540,918 + -1.0 540,918 + -0.3 540,918 + +0.7 540,918 + +0.7 540,919 - -0.0 540,919 - -1.6
Or see this region's nucleotide sequence