Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02335 and AO356_02340 are separated by 101 nucleotides AO356_02340 and AO356_02345 are separated by 174 nucleotides AO356_02345 and AO356_02350 are separated by 214 nucleotides
AO356_02335: AO356_02335 - hypothetical protein, at 506,257 to 506,694
_02335
AO356_02340: AO356_02340 - universal stress protein UspA, at 506,796 to 507,236
_02340
AO356_02345: AO356_02345 - ABC transporter ATP-binding protein, at 507,411 to 509,327
_02345
AO356_02350: AO356_02350 - lytic transglycosylase, at 509,542 to 511,470
_02350
Position (kb) 507
508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.502 kb on - strand, within AO356_02335 at 506.620 kb on + strand, within AO356_02335 at 506.620 kb on + strand, within AO356_02335 at 506.621 kb on - strand, within AO356_02335 at 506.653 kb on + strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.654 kb on - strand at 506.694 kb on + strand at 506.694 kb on + strand at 506.695 kb on - strand at 506.695 kb on - strand at 506.700 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.761 kb on + strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.762 kb on - strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.765 kb on + strand at 506.799 kb on + strand at 506.799 kb on + strand at 506.800 kb on - strand at 506.800 kb on - strand at 506.802 kb on + strand at 506.802 kb on + strand at 506.803 kb on - strand at 506.803 kb on - strand at 506.803 kb on - strand at 506.803 kb on - strand at 506.803 kb on - strand at 507.061 kb on - strand, within AO356_02340 at 507.205 kb on + strand at 507.205 kb on + strand at 507.205 kb on + strand at 507.205 kb on + strand at 507.206 kb on - strand at 507.206 kb on - strand at 507.206 kb on - strand at 507.206 kb on - strand at 507.214 kb on + strand at 507.214 kb on + strand at 507.214 kb on + strand at 507.215 kb on - strand at 507.234 kb on + strand at 507.234 kb on + strand at 507.234 kb on + strand at 507.234 kb on + strand at 507.235 kb on - strand at 507.235 kb on - strand at 507.240 kb on + strand at 507.240 kb on + strand at 507.240 kb on + strand at 507.241 kb on - strand at 507.241 kb on - strand at 507.241 kb on - strand at 507.247 kb on - strand at 507.282 kb on - strand at 507.514 kb on + strand at 507.515 kb on - strand at 507.613 kb on + strand, within AO356_02345 at 507.613 kb on + strand, within AO356_02345 at 507.613 kb on + strand, within AO356_02345 at 507.613 kb on + strand, within AO356_02345 at 507.614 kb on - strand, within AO356_02345 at 507.614 kb on - strand, within AO356_02345 at 507.614 kb on - strand, within AO356_02345 at 507.778 kb on + strand, within AO356_02345 at 508.066 kb on + strand, within AO356_02345 at 508.066 kb on + strand, within AO356_02345 at 508.066 kb on + strand, within AO356_02345 at 508.177 kb on + strand, within AO356_02345 at 508.177 kb on + strand, within AO356_02345 at 508.625 kb on - strand, within AO356_02345 at 508.625 kb on - strand, within AO356_02345 at 509.358 kb on - strand at 509.358 kb on - strand at 509.358 kb on - strand at 509.475 kb on + strand at 509.475 kb on + strand at 509.480 kb on + strand at 509.480 kb on + strand at 509.490 kb on + strand at 509.490 kb on + strand at 509.490 kb on + strand at 509.491 kb on - strand at 509.491 kb on - strand at 509.491 kb on - strand at 509.491 kb on - strand at 509.567 kb on + strand at 509.567 kb on + strand at 509.567 kb on + strand at 509.567 kb on + strand at 509.568 kb on - strand at 509.568 kb on - strand at 509.582 kb on + strand at 509.582 kb on + strand at 509.582 kb on + strand at 509.583 kb on - strand at 509.583 kb on - strand at 509.620 kb on - strand at 509.620 kb on - strand at 509.620 kb on - strand at 509.638 kb on + strand at 509.638 kb on + strand at 509.639 kb on - strand at 509.639 kb on - strand at 509.639 kb on - strand at 509.641 kb on + strand at 509.641 kb on + strand at 509.641 kb on + strand at 509.642 kb on - strand at 509.642 kb on - strand at 509.642 kb on - strand at 509.686 kb on + strand at 509.686 kb on + strand at 509.732 kb on - strand at 509.741 kb on - strand, within AO356_02350 at 509.893 kb on + strand, within AO356_02350 at 509.893 kb on + strand, within AO356_02350 at 509.893 kb on + strand, within AO356_02350 at 509.893 kb on + strand, within AO356_02350 at 509.894 kb on - strand, within AO356_02350 at 509.894 kb on - strand, within AO356_02350 at 509.894 kb on - strand, within AO356_02350 at 509.944 kb on + strand, within AO356_02350 at 509.945 kb on - strand, within AO356_02350 at 509.977 kb on + strand, within AO356_02350 at 509.977 kb on + strand, within AO356_02350 at 510.121 kb on + strand, within AO356_02350 at 510.122 kb on - strand, within AO356_02350 at 510.122 kb on - strand, within AO356_02350
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 506,502 - AO356_02335 0.56 -2.8 506,620 + AO356_02335 0.83 -0.8 506,620 + AO356_02335 0.83 -0.7 506,621 - AO356_02335 0.83 -1.9 506,653 + -0.4 506,654 - -0.8 506,654 - -1.6 506,654 - -1.1 506,654 - -0.4 506,654 - -1.5 506,654 - -1.8 506,654 - -1.8 506,694 + -1.9 506,694 + -2.5 506,695 - +0.4 506,695 - +0.2 506,700 + -2.6 506,761 + -0.2 506,761 + -0.1 506,761 + +0.0 506,761 + -1.6 506,761 + +0.8 506,761 + +1.2 506,761 + +0.7 506,761 + -0.2 506,761 + -0.4 506,762 - -1.1 506,762 - -0.0 506,762 - -0.8 506,762 - -0.1 506,762 - -1.2 506,765 + -0.6 506,765 + -0.2 506,765 + -0.4 506,765 + +0.2 506,765 + -1.1 506,799 + -0.8 506,799 + -1.2 506,800 - +1.7 506,800 - -0.3 506,802 + -0.3 506,802 + +0.9 506,803 - +1.6 506,803 - +0.1 506,803 - -1.9 506,803 - +0.2 506,803 - +1.1 507,061 - AO356_02340 0.60 +1.0 507,205 + -0.2 507,205 + -0.0 507,205 + -0.0 507,205 + +1.3 507,206 - +0.5 507,206 - -1.8 507,206 - +0.8 507,206 - +0.8 507,214 + -0.2 507,214 + -0.1 507,214 + +0.6 507,215 - -1.2 507,234 + -0.7 507,234 + -0.0 507,234 + -0.5 507,234 + -0.6 507,235 - +1.1 507,235 - +0.6 507,240 + -1.4 507,240 + -0.9 507,240 + -1.5 507,241 - -1.9 507,241 - +1.1 507,241 - -1.2 507,247 - -0.6 507,282 - +0.0 507,514 + -0.7 507,515 - +0.3 507,613 + AO356_02345 0.11 +0.6 507,613 + AO356_02345 0.11 +0.7 507,613 + AO356_02345 0.11 -0.8 507,613 + AO356_02345 0.11 +0.9 507,614 - AO356_02345 0.11 +0.4 507,614 - AO356_02345 0.11 -0.1 507,614 - AO356_02345 0.11 +0.0 507,778 + AO356_02345 0.19 -1.1 508,066 + AO356_02345 0.34 -1.6 508,066 + AO356_02345 0.34 -1.4 508,066 + AO356_02345 0.34 +0.6 508,177 + AO356_02345 0.40 -1.0 508,177 + AO356_02345 0.40 -1.0 508,625 - AO356_02345 0.63 +0.8 508,625 - AO356_02345 0.63 -0.8 509,358 - -1.0 509,358 - -0.8 509,358 - -0.4 509,475 + +1.2 509,475 + +1.3 509,480 + -0.2 509,480 + -0.5 509,490 + -0.9 509,490 + +0.5 509,490 + -0.9 509,491 - +0.1 509,491 - +2.1 509,491 - +2.1 509,491 - +0.9 509,567 + -0.8 509,567 + -0.5 509,567 + +1.0 509,567 + +1.1 509,568 - -2.1 509,568 - -1.0 509,582 + -0.4 509,582 + -0.6 509,582 + +0.1 509,583 - +0.3 509,583 - -1.7 509,620 - -0.5 509,620 - -0.3 509,620 - +0.1 509,638 + +0.4 509,638 + +0.8 509,639 - -1.8 509,639 - -1.6 509,639 - -0.4 509,641 + -0.8 509,641 + +0.8 509,641 + +1.2 509,642 - +0.2 509,642 - -0.4 509,642 - -0.5 509,686 + +0.7 509,686 + -0.3 509,732 - -0.4 509,741 - AO356_02350 0.10 -1.0 509,893 + AO356_02350 0.18 +0.3 509,893 + AO356_02350 0.18 +0.6 509,893 + AO356_02350 0.18 +0.7 509,893 + AO356_02350 0.18 +0.7 509,894 - AO356_02350 0.18 -0.6 509,894 - AO356_02350 0.18 -0.4 509,894 - AO356_02350 0.18 -0.5 509,944 + AO356_02350 0.21 -0.1 509,945 - AO356_02350 0.21 +0.7 509,977 + AO356_02350 0.23 +0.0 509,977 + AO356_02350 0.23 +1.5 510,121 + AO356_02350 0.30 +1.1 510,122 - AO356_02350 0.30 -1.4 510,122 - AO356_02350 0.30 +0.1
Or see this region's nucleotide sequence