Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02040

Experiment: Sisomicin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02030 and AO356_02035 overlap by 4 nucleotidesAO356_02035 and AO356_02040 overlap by 4 nucleotidesAO356_02040 and AO356_02045 overlap by 1 nucleotidesAO356_02045 and AO356_02050 overlap by 4 nucleotides AO356_02030: AO356_02030 - baseplate assembly protein, at 445,269 to 445,841 _02030 AO356_02035: AO356_02035 - baseplate assembly protein, at 445,838 to 446,182 _02035 AO356_02040: AO356_02040 - baseplate assembly protein, at 446,179 to 447,090 _02040 AO356_02045: AO356_02045 - phage tail protein, at 447,090 to 447,707 _02045 AO356_02050: AO356_02050 - phage tail protein, at 447,704 to 448,171 _02050 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1 2at 445.218 kb on + strandat 445.218 kb on + strandat 445.218 kb on + strandat 445.280 kb on - strandat 445.569 kb on + strand, within AO356_02030at 445.704 kb on + strand, within AO356_02030at 445.705 kb on - strand, within AO356_02030at 445.705 kb on - strand, within AO356_02030at 445.944 kb on - strand, within AO356_02035at 446.231 kb on + strandat 446.232 kb on - strandat 446.232 kb on - strandat 446.246 kb on - strandat 446.275 kb on + strand, within AO356_02040at 446.275 kb on + strand, within AO356_02040at 446.275 kb on + strand, within AO356_02040at 446.276 kb on - strand, within AO356_02040at 446.613 kb on + strand, within AO356_02040at 446.613 kb on + strand, within AO356_02040at 446.613 kb on + strand, within AO356_02040at 446.614 kb on - strand, within AO356_02040at 446.614 kb on - strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.617 kb on + strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.618 kb on - strand, within AO356_02040at 446.762 kb on - strand, within AO356_02040at 446.830 kb on + strand, within AO356_02040at 446.830 kb on + strand, within AO356_02040at 446.831 kb on - strand, within AO356_02040at 447.041 kb on - strandat 447.052 kb on + strandat 447.052 kb on + strandat 447.195 kb on + strand, within AO356_02045at 447.196 kb on - strand, within AO356_02045at 447.312 kb on + strand, within AO356_02045at 447.313 kb on - strand, within AO356_02045at 447.313 kb on - strand, within AO356_02045at 447.313 kb on - strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.315 kb on + strand, within AO356_02045at 447.316 kb on - strand, within AO356_02045at 447.316 kb on - strand, within AO356_02045at 447.316 kb on - strand, within AO356_02045at 447.316 kb on - strand, within AO356_02045at 447.480 kb on + strand, within AO356_02045at 447.480 kb on + strand, within AO356_02045at 447.576 kb on - strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.611 kb on + strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.612 kb on - strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.615 kb on + strand, within AO356_02045at 447.616 kb on - strand, within AO356_02045at 447.616 kb on - strand, within AO356_02045at 447.616 kb on - strand, within AO356_02045at 447.616 kb on - strand, within AO356_02045at 447.616 kb on - strand, within AO356_02045at 447.652 kb on - strandat 447.652 kb on - strandat 447.699 kb on + strandat 447.699 kb on + strandat 447.700 kb on - strandat 447.864 kb on + strand, within AO356_02050at 447.865 kb on - strand, within AO356_02050at 447.960 kb on + strand, within AO356_02050at 447.960 kb on + strand, within AO356_02050at 447.961 kb on - strand, within AO356_02050at 447.961 kb on - strand, within AO356_02050at 447.961 kb on - strand, within AO356_02050at 447.961 kb on - strand, within AO356_02050at 447.961 kb on - strand, within AO356_02050at 447.961 kb on - strand, within AO356_02050at 447.992 kb on + strand, within AO356_02050at 447.992 kb on + strand, within AO356_02050at 447.993 kb on - strand, within AO356_02050at 447.993 kb on - strand, within AO356_02050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
remove
445,218 + +0.3
445,218 + -0.4
445,218 + -1.5
445,280 - -0.2
445,569 + AO356_02030 0.52 +0.5
445,704 + AO356_02030 0.76 +0.8
445,705 - AO356_02030 0.76 +0.8
445,705 - AO356_02030 0.76 +0.6
445,944 - AO356_02035 0.31 +0.8
446,231 + -1.4
446,232 - -1.1
446,232 - -0.1
446,246 - +0.1
446,275 + AO356_02040 0.11 +0.1
446,275 + AO356_02040 0.11 +0.0
446,275 + AO356_02040 0.11 +0.3
446,276 - AO356_02040 0.11 -0.4
446,613 + AO356_02040 0.48 -0.9
446,613 + AO356_02040 0.48 +0.6
446,613 + AO356_02040 0.48 -0.7
446,614 - AO356_02040 0.48 -0.2
446,614 - AO356_02040 0.48 +0.8
446,617 + AO356_02040 0.48 +0.8
446,617 + AO356_02040 0.48 +0.1
446,617 + AO356_02040 0.48 -0.4
446,617 + AO356_02040 0.48 +0.9
446,617 + AO356_02040 0.48 -0.1
446,617 + AO356_02040 0.48 -0.3
446,617 + AO356_02040 0.48 -0.0
446,618 - AO356_02040 0.48 +0.1
446,618 - AO356_02040 0.48 -1.8
446,618 - AO356_02040 0.48 -0.8
446,618 - AO356_02040 0.48 +1.4
446,618 - AO356_02040 0.48 +0.7
446,618 - AO356_02040 0.48 +0.7
446,618 - AO356_02040 0.48 -0.6
446,762 - AO356_02040 0.64 +2.0
446,830 + AO356_02040 0.71 +1.0
446,830 + AO356_02040 0.71 +0.6
446,831 - AO356_02040 0.71 +0.5
447,041 - -0.7
447,052 + -1.0
447,052 + +0.5
447,195 + AO356_02045 0.17 +0.7
447,196 - AO356_02045 0.17 -0.1
447,312 + AO356_02045 0.36 -1.3
447,313 - AO356_02045 0.36 -0.3
447,313 - AO356_02045 0.36 +0.2
447,313 - AO356_02045 0.36 -0.6
447,315 + AO356_02045 0.36 -1.5
447,315 + AO356_02045 0.36 -0.4
447,315 + AO356_02045 0.36 -0.4
447,315 + AO356_02045 0.36 -2.2
447,315 + AO356_02045 0.36 -2.2
447,315 + AO356_02045 0.36 -0.2
447,315 + AO356_02045 0.36 +1.3
447,315 + AO356_02045 0.36 -1.9
447,316 - AO356_02045 0.37 +1.2
447,316 - AO356_02045 0.37 -1.1
447,316 - AO356_02045 0.37 -1.2
447,316 - AO356_02045 0.37 -0.8
447,480 + AO356_02045 0.63 +0.5
447,480 + AO356_02045 0.63 -0.7
447,576 - AO356_02045 0.79 +0.9
447,611 + AO356_02045 0.84 -1.6
447,611 + AO356_02045 0.84 +0.6
447,611 + AO356_02045 0.84 -0.6
447,611 + AO356_02045 0.84 -0.4
447,611 + AO356_02045 0.84 +0.4
447,611 + AO356_02045 0.84 -0.2
447,611 + AO356_02045 0.84 -0.3
447,611 + AO356_02045 0.84 -0.0
447,611 + AO356_02045 0.84 -0.8
447,612 - AO356_02045 0.84 +1.0
447,612 - AO356_02045 0.84 +1.1
447,612 - AO356_02045 0.84 +0.4
447,612 - AO356_02045 0.84 -0.1
447,612 - AO356_02045 0.84 -0.7
447,612 - AO356_02045 0.84 -0.4
447,612 - AO356_02045 0.84 +0.8
447,612 - AO356_02045 0.84 -0.3
447,615 + AO356_02045 0.85 -0.9
447,615 + AO356_02045 0.85 -2.0
447,615 + AO356_02045 0.85 +0.1
447,615 + AO356_02045 0.85 -1.1
447,615 + AO356_02045 0.85 -2.0
447,615 + AO356_02045 0.85 +1.0
447,615 + AO356_02045 0.85 -1.1
447,616 - AO356_02045 0.85 -0.6
447,616 - AO356_02045 0.85 +1.2
447,616 - AO356_02045 0.85 +0.3
447,616 - AO356_02045 0.85 +0.1
447,616 - AO356_02045 0.85 +0.0
447,652 - +0.4
447,652 - -0.0
447,699 + +0.7
447,699 + +0.2
447,700 - +0.8
447,864 + AO356_02050 0.34 -0.4
447,865 - AO356_02050 0.34 -0.3
447,960 + AO356_02050 0.55 +0.1
447,960 + AO356_02050 0.55 -0.4
447,961 - AO356_02050 0.55 +0.9
447,961 - AO356_02050 0.55 +1.8
447,961 - AO356_02050 0.55 +1.4
447,961 - AO356_02050 0.55 +0.2
447,961 - AO356_02050 0.55 +0.3
447,961 - AO356_02050 0.55 +0.3
447,992 + AO356_02050 0.62 +0.1
447,992 + AO356_02050 0.62 -0.3
447,993 - AO356_02050 0.62 +0.1
447,993 - AO356_02050 0.62 -1.3

Or see this region's nucleotide sequence