Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01820

Experiment: Sisomicin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_01815 and AO356_01820 are separated by 200 nucleotidesAO356_01820 and AO356_01825 are separated by 129 nucleotidesAO356_01825 and AO356_01830 are separated by 6 nucleotides AO356_01815: AO356_01815 - serine/threonine protein kinase, at 406,038 to 407,270 _01815 AO356_01820: AO356_01820 - hypothetical protein, at 407,471 to 407,980 _01820 AO356_01825: AO356_01825 - hypothetical protein, at 408,110 to 408,757 _01825 AO356_01830: AO356_01830 - shikimate dehydrogenase, at 408,764 to 409,585 _01830 Position (kb) 407 408Strain fitness (log2 ratio) -2 -1 0 1at 406.547 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.697 kb on - strand, within AO356_01815at 406.844 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.896 kb on + strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.897 kb on - strand, within AO356_01815at 406.960 kb on + strand, within AO356_01815at 406.961 kb on - strand, within AO356_01815at 406.978 kb on + strand, within AO356_01815at 406.978 kb on + strand, within AO356_01815at 406.978 kb on + strand, within AO356_01815at 406.979 kb on - strand, within AO356_01815at 407.404 kb on + strandat 407.404 kb on + strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.405 kb on - strandat 407.473 kb on - strandat 407.473 kb on - strandat 407.487 kb on + strandat 407.487 kb on + strandat 407.488 kb on - strandat 407.488 kb on - strandat 407.488 kb on - strandat 407.488 kb on - strandat 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.532 kb on + strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.533 kb on - strand, within AO356_01820at 407.571 kb on + strand, within AO356_01820at 407.583 kb on + strand, within AO356_01820at 407.583 kb on + strand, within AO356_01820at 407.584 kb on - strand, within AO356_01820at 407.584 kb on - strand, within AO356_01820at 407.584 kb on - strand, within AO356_01820at 407.694 kb on - strand, within AO356_01820at 407.694 kb on - strand, within AO356_01820at 407.694 kb on - strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.745 kb on + strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.746 kb on - strand, within AO356_01820at 407.964 kb on + strandat 407.974 kb on + strandat 407.974 kb on + strandat 407.974 kb on + strandat 407.974 kb on + strandat 407.975 kb on - strandat 407.975 kb on - strandat 408.028 kb on + strandat 408.030 kb on + strandat 408.030 kb on + strandat 408.030 kb on + strandat 408.031 kb on - strandat 408.060 kb on + strandat 408.074 kb on + strandat 408.075 kb on - strandat 408.075 kb on - strandat 408.154 kb on + strandat 408.154 kb on + strandat 408.215 kb on + strand, within AO356_01825at 408.216 kb on - strand, within AO356_01825at 408.596 kb on + strand, within AO356_01825at 408.596 kb on + strand, within AO356_01825at 408.596 kb on + strand, within AO356_01825at 408.597 kb on - strand, within AO356_01825at 408.597 kb on - strand, within AO356_01825at 408.756 kb on - strandat 408.765 kb on + strandat 408.829 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
remove
406,547 + AO356_01815 0.41 +0.3
406,696 + AO356_01815 0.53 +0.8
406,696 + AO356_01815 0.53 -0.5
406,696 + AO356_01815 0.53 +0.4
406,696 + AO356_01815 0.53 -1.9
406,697 - AO356_01815 0.53 -0.8
406,844 + AO356_01815 0.65 +0.3
406,896 + AO356_01815 0.70 -0.5
406,896 + AO356_01815 0.70 -0.5
406,896 + AO356_01815 0.70 +0.6
406,896 + AO356_01815 0.70 -0.5
406,896 + AO356_01815 0.70 -0.9
406,897 - AO356_01815 0.70 +0.3
406,897 - AO356_01815 0.70 +0.2
406,897 - AO356_01815 0.70 -1.6
406,897 - AO356_01815 0.70 +0.8
406,897 - AO356_01815 0.70 -0.0
406,897 - AO356_01815 0.70 -0.6
406,960 + AO356_01815 0.75 +1.6
406,961 - AO356_01815 0.75 +0.2
406,978 + AO356_01815 0.76 +0.2
406,978 + AO356_01815 0.76 -0.2
406,978 + AO356_01815 0.76 -0.9
406,979 - AO356_01815 0.76 -0.7
407,404 + +0.6
407,404 + -1.4
407,405 - -1.2
407,405 - +0.8
407,405 - +0.8
407,405 - -2.1
407,405 - -0.5
407,405 - +0.0
407,405 - -0.1
407,473 - +0.5
407,473 - -0.4
407,487 + -0.3
407,487 + -0.1
407,488 - -0.5
407,488 - +1.5
407,488 - -1.0
407,488 - +0.6
407,532 + AO356_01820 0.12 -0.6
407,532 + AO356_01820 0.12 -0.9
407,532 + AO356_01820 0.12 +0.7
407,532 + AO356_01820 0.12 +0.7
407,532 + AO356_01820 0.12 +0.4
407,532 + AO356_01820 0.12 +0.1
407,533 - AO356_01820 0.12 -0.9
407,533 - AO356_01820 0.12 +0.4
407,533 - AO356_01820 0.12 +0.6
407,533 - AO356_01820 0.12 +1.0
407,533 - AO356_01820 0.12 +0.4
407,533 - AO356_01820 0.12 +0.7
407,533 - AO356_01820 0.12 +0.5
407,533 - AO356_01820 0.12 +0.2
407,533 - AO356_01820 0.12 -2.2
407,533 - AO356_01820 0.12 -1.2
407,533 - AO356_01820 0.12 -0.9
407,533 - AO356_01820 0.12 -1.2
407,533 - AO356_01820 0.12 -0.7
407,571 + AO356_01820 0.20 -0.3
407,583 + AO356_01820 0.22 +1.6
407,583 + AO356_01820 0.22 -0.3
407,584 - AO356_01820 0.22 +0.5
407,584 - AO356_01820 0.22 -0.9
407,584 - AO356_01820 0.22 +0.0
407,694 - AO356_01820 0.44 +0.4
407,694 - AO356_01820 0.44 -2.2
407,694 - AO356_01820 0.44 -0.0
407,745 + AO356_01820 0.54 +0.8
407,745 + AO356_01820 0.54 -0.9
407,745 + AO356_01820 0.54 +1.2
407,745 + AO356_01820 0.54 +0.2
407,745 + AO356_01820 0.54 +0.5
407,746 - AO356_01820 0.54 +1.0
407,746 - AO356_01820 0.54 -2.2
407,746 - AO356_01820 0.54 +0.3
407,746 - AO356_01820 0.54 -0.0
407,746 - AO356_01820 0.54 +1.4
407,964 + -0.2
407,974 + -0.6
407,974 + -0.1
407,974 + -0.0
407,974 + +0.8
407,975 - -0.8
407,975 - +1.1
408,028 + +0.1
408,030 + -1.5
408,030 + +0.7
408,030 + -1.9
408,031 - -1.1
408,060 + -1.1
408,074 + -0.0
408,075 - -1.3
408,075 - +0.4
408,154 + +0.3
408,154 + -0.9
408,215 + AO356_01825 0.16 -0.8
408,216 - AO356_01825 0.16 +0.4
408,596 + AO356_01825 0.75 +0.8
408,596 + AO356_01825 0.75 +0.6
408,596 + AO356_01825 0.75 +1.0
408,597 - AO356_01825 0.75 +0.3
408,597 - AO356_01825 0.75 +0.4
408,756 - +0.0
408,765 + +1.1
408,829 - +1.2

Or see this region's nucleotide sequence