Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01790 and AO356_01795 are separated by 469 nucleotides AO356_01795 and AO356_01800 are separated by 26 nucleotides AO356_01800 and AO356_01805 are separated by 140 nucleotides
AO356_01790: AO356_01790 - hypothetical protein, at 401,388 to 402,065
_01790
AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284
_01795
AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562
_01800
AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599
_01805
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 401.686 kb on + strand, within AO356_01790 at 401.686 kb on + strand, within AO356_01790 at 401.686 kb on + strand, within AO356_01790 at 401.755 kb on + strand, within AO356_01790 at 401.771 kb on - strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.880 kb on + strand, within AO356_01790 at 401.911 kb on + strand, within AO356_01790 at 401.912 kb on - strand, within AO356_01790 at 401.912 kb on - strand, within AO356_01790 at 401.926 kb on + strand, within AO356_01790 at 401.927 kb on - strand, within AO356_01790 at 401.927 kb on - strand, within AO356_01790 at 401.939 kb on + strand, within AO356_01790 at 401.939 kb on + strand, within AO356_01790 at 401.940 kb on - strand, within AO356_01790 at 401.983 kb on - strand, within AO356_01790 at 402.030 kb on + strand at 402.121 kb on + strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.143 kb on - strand at 402.144 kb on + strand at 402.144 kb on + strand at 402.144 kb on + strand at 402.145 kb on - strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.162 kb on + strand at 402.173 kb on + strand at 402.174 kb on - strand at 402.174 kb on - strand at 402.233 kb on + strand at 402.233 kb on + strand at 402.234 kb on - strand at 402.247 kb on + strand at 402.247 kb on + strand at 402.248 kb on - strand at 402.248 kb on - strand at 402.276 kb on - strand at 402.276 kb on - strand at 402.321 kb on + strand at 402.322 kb on - strand at 402.322 kb on - strand at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.640 kb on + strand, within AO356_01795 at 402.641 kb on - strand, within AO356_01795 at 403.154 kb on - strand, within AO356_01795 at 403.204 kb on + strand, within AO356_01795 at 403.205 kb on - strand, within AO356_01795 at 403.271 kb on - strand at 403.277 kb on + strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.555 kb on + strand at 403.555 kb on + strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.586 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.713 kb on - strand at 403.713 kb on - strand at 403.727 kb on + strand at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.834 kb on + strand, within AO356_01805 at 403.835 kb on - strand, within AO356_01805 at 403.905 kb on - strand, within AO356_01805 at 404.025 kb on - strand, within AO356_01805
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 401,686 + AO356_01790 0.44 -2.0 401,686 + AO356_01790 0.44 +4.7 401,686 + AO356_01790 0.44 -0.2 401,755 + AO356_01790 0.54 -0.6 401,771 - AO356_01790 0.56 -0.9 401,792 + AO356_01790 0.60 -1.4 401,792 + AO356_01790 0.60 -0.6 401,792 + AO356_01790 0.60 -1.5 401,792 + AO356_01790 0.60 -0.7 401,792 + AO356_01790 0.60 +0.8 401,792 + AO356_01790 0.60 -0.4 401,793 - AO356_01790 0.60 -0.6 401,793 - AO356_01790 0.60 -0.3 401,793 - AO356_01790 0.60 -0.1 401,793 - AO356_01790 0.60 -2.2 401,880 + AO356_01790 0.73 +0.3 401,911 + AO356_01790 0.77 -2.4 401,912 - AO356_01790 0.77 +0.5 401,912 - AO356_01790 0.77 -0.4 401,926 + AO356_01790 0.79 +0.2 401,927 - AO356_01790 0.79 +0.5 401,927 - AO356_01790 0.79 -0.1 401,939 + AO356_01790 0.81 +0.3 401,939 + AO356_01790 0.81 -1.7 401,940 - AO356_01790 0.81 -1.8 401,983 - AO356_01790 0.88 -1.9 402,030 + +1.1 402,121 + +0.8 402,122 - -1.1 402,122 - +0.8 402,122 - +0.9 402,122 - -0.8 402,122 - +0.1 402,143 - +0.4 402,144 + -1.5 402,144 + -1.1 402,144 + -2.2 402,145 - +0.9 402,150 + -0.8 402,150 + -1.6 402,150 + -0.3 402,150 + -1.7 402,151 - +0.4 402,151 - -0.5 402,151 - +0.5 402,151 - +0.5 402,151 - +0.1 402,151 - +1.1 402,151 - +0.6 402,162 + -0.4 402,173 + -0.8 402,174 - +0.1 402,174 - +0.3 402,233 + -1.4 402,233 + -0.4 402,234 - +1.5 402,247 + -0.1 402,247 + -2.4 402,248 - +0.2 402,248 - +0.2 402,276 - +0.6 402,276 - -1.3 402,321 + -0.6 402,322 - +0.6 402,322 - +1.0 402,623 + AO356_01795 0.12 +0.4 402,623 + AO356_01795 0.12 -0.5 402,623 + AO356_01795 0.12 +1.6 402,623 + AO356_01795 0.12 +0.4 402,623 + AO356_01795 0.12 -0.9 402,624 - AO356_01795 0.12 +0.2 402,624 - AO356_01795 0.12 -0.6 402,624 - AO356_01795 0.12 +0.8 402,627 + AO356_01795 0.12 +0.1 402,627 + AO356_01795 0.12 +0.1 402,627 + AO356_01795 0.12 +0.1 402,627 + AO356_01795 0.12 -0.5 402,627 + AO356_01795 0.12 -0.7 402,628 - AO356_01795 0.12 +0.8 402,628 - AO356_01795 0.12 +0.2 402,628 - AO356_01795 0.12 +1.4 402,628 - AO356_01795 0.12 -0.8 402,628 - AO356_01795 0.12 +0.2 402,628 - AO356_01795 0.12 +0.6 402,628 - AO356_01795 0.12 -0.2 402,629 + AO356_01795 0.13 +0.7 402,629 + AO356_01795 0.13 +0.6 402,629 + AO356_01795 0.13 -1.0 402,629 + AO356_01795 0.13 +0.4 402,629 + AO356_01795 0.13 -0.6 402,629 + AO356_01795 0.13 -1.6 402,629 + AO356_01795 0.13 -0.4 402,630 - AO356_01795 0.13 +0.6 402,630 - AO356_01795 0.13 +0.6 402,630 - AO356_01795 0.13 -1.1 402,630 - AO356_01795 0.13 -0.3 402,630 - AO356_01795 0.13 -0.1 402,630 - AO356_01795 0.13 +0.2 402,640 + AO356_01795 0.14 -0.6 402,641 - AO356_01795 0.14 +0.0 403,154 - AO356_01795 0.83 +0.2 403,204 + AO356_01795 0.89 +0.5 403,205 - AO356_01795 0.89 -0.1 403,271 - +0.3 403,277 + -1.0 403,278 - -0.8 403,278 - -0.2 403,278 - +0.6 403,312 + -0.4 403,312 + +0.1 403,312 + -1.2 403,312 + -0.5 403,555 + -0.7 403,555 + -0.9 403,556 - +0.8 403,556 - -0.5 403,556 - -0.6 403,556 - -0.8 403,556 - -0.8 403,556 - -0.6 403,586 + +1.0 403,628 + -0.5 403,628 + -0.1 403,628 + -0.4 403,628 + +0.7 403,628 + -2.2 403,628 + -0.4 403,628 + -2.2 403,628 + -1.0 403,628 + +0.5 403,628 + +0.2 403,628 + +0.7 403,628 + -0.4 403,628 + -0.3 403,629 - -0.5 403,629 - -0.2 403,629 - -0.9 403,629 - -2.2 403,713 - +0.7 403,713 - -0.7 403,727 + +0.6 403,832 + AO356_01805 0.14 -1.4 403,832 + AO356_01805 0.14 +0.6 403,832 + AO356_01805 0.14 +0.3 403,832 + AO356_01805 0.14 +0.9 403,832 + AO356_01805 0.14 -0.4 403,832 + AO356_01805 0.14 +0.4 403,832 + AO356_01805 0.14 -0.5 403,832 + AO356_01805 0.14 -0.5 403,833 - AO356_01805 0.14 -0.0 403,833 - AO356_01805 0.14 -0.0 403,833 - AO356_01805 0.14 -0.6 403,833 - AO356_01805 0.14 +2.4 403,833 - AO356_01805 0.14 -1.4 403,834 + AO356_01805 0.15 -0.4 403,835 - AO356_01805 0.15 -0.2 403,905 - AO356_01805 0.23 -1.6 404,025 - AO356_01805 0.36 +0.5
Or see this region's nucleotide sequence