Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01740 and AO356_01745 are separated by 161 nucleotides AO356_01745 and AO356_01750 are separated by 107 nucleotides AO356_01750 and AO356_01755 are separated by 93 nucleotides
AO356_01740: AO356_01740 - DNA-binding protein, at 391,818 to 394,214
_01740
AO356_01745: AO356_01745 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 394,376 to 395,659
_01745
AO356_01750: AO356_01750 - ATP-dependent Clp protease proteolytic subunit, at 395,767 to 396,408
_01750
AO356_01755: AO356_01755 - trigger factor, at 396,502 to 397,812
_01755
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 393.726 kb on - strand, within AO356_01740 at 393.805 kb on + strand, within AO356_01740 at 394.010 kb on + strand at 394.010 kb on + strand at 394.014 kb on + strand at 394.014 kb on + strand at 394.227 kb on - strand at 394.259 kb on + strand at 394.259 kb on + strand at 394.259 kb on + strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.260 kb on - strand at 394.316 kb on + strand at 394.326 kb on + strand at 394.327 kb on - strand at 394.358 kb on - strand at 394.378 kb on - strand at 394.378 kb on - strand at 394.420 kb on - strand at 394.420 kb on - strand at 394.420 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.425 kb on + strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.426 kb on - strand at 394.449 kb on - strand at 394.449 kb on - strand at 394.504 kb on - strand at 394.504 kb on - strand at 394.504 kb on - strand at 394.620 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 394.836 kb on - strand, within AO356_01745 at 395.109 kb on + strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.110 kb on - strand, within AO356_01745 at 395.192 kb on + strand, within AO356_01745 at 395.192 kb on + strand, within AO356_01745 at 395.193 kb on - strand, within AO356_01745 at 395.193 kb on - strand, within AO356_01745 at 395.197 kb on - strand, within AO356_01745 at 395.370 kb on + strand, within AO356_01745 at 395.371 kb on - strand, within AO356_01745 at 395.428 kb on - strand, within AO356_01745 at 395.616 kb on + strand at 395.617 kb on - strand at 395.617 kb on - strand at 395.768 kb on + strand at 395.768 kb on + strand at 395.769 kb on - strand at 396.129 kb on - strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.173 kb on + strand, within AO356_01750 at 396.245 kb on + strand, within AO356_01750 at 396.246 kb on - strand, within AO356_01750 at 396.246 kb on - strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.299 kb on + strand, within AO356_01750 at 396.300 kb on - strand, within AO356_01750 at 396.429 kb on + strand at 396.430 kb on - strand at 396.433 kb on + strand at 396.433 kb on + strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.434 kb on - strand at 396.445 kb on - strand at 396.450 kb on + strand at 396.450 kb on + strand at 396.483 kb on - strand at 396.483 kb on - strand at 396.483 kb on - strand at 396.571 kb on - strand at 396.589 kb on - strand at 396.651 kb on - strand, within AO356_01755 at 396.651 kb on - strand, within AO356_01755
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 393,726 - AO356_01740 0.80 -1.1 393,805 + AO356_01740 0.83 -0.6 394,010 + -0.6 394,010 + -0.8 394,014 + -0.1 394,014 + -0.2 394,227 - -0.6 394,259 + -0.5 394,259 + -0.4 394,259 + -0.8 394,260 - +0.4 394,260 - -1.9 394,260 - -2.0 394,260 - -1.8 394,260 - +0.5 394,316 + +0.1 394,326 + -1.0 394,327 - +0.9 394,358 - -0.6 394,378 - -1.4 394,378 - -0.6 394,420 - -1.3 394,420 - -2.3 394,420 - -1.5 394,424 - -0.1 394,424 - -0.2 394,424 - -0.5 394,424 - +0.8 394,424 - -1.7 394,424 - -2.0 394,424 - -2.1 394,425 + -1.4 394,425 + -0.4 394,425 + -0.5 394,425 + -0.3 394,425 + -0.9 394,425 + -0.9 394,425 + -1.2 394,425 + -0.4 394,426 - -0.2 394,426 - -1.2 394,426 - -1.1 394,426 - -1.0 394,426 - -0.2 394,426 - +0.1 394,449 - +0.7 394,449 - -0.4 394,504 - -1.1 394,504 - -0.2 394,504 - +0.9 394,620 - AO356_01745 0.19 +0.1 394,836 - AO356_01745 0.36 +0.1 394,836 - AO356_01745 0.36 -0.4 394,836 - AO356_01745 0.36 +0.1 395,109 + AO356_01745 0.57 -1.2 395,110 - AO356_01745 0.57 +1.7 395,110 - AO356_01745 0.57 +0.6 395,110 - AO356_01745 0.57 +0.3 395,192 + AO356_01745 0.64 +0.4 395,192 + AO356_01745 0.64 -0.1 395,193 - AO356_01745 0.64 -0.4 395,193 - AO356_01745 0.64 +0.6 395,197 - AO356_01745 0.64 -1.1 395,370 + AO356_01745 0.77 +0.9 395,371 - AO356_01745 0.77 -0.5 395,428 - AO356_01745 0.82 -0.9 395,616 + -0.1 395,617 - +0.2 395,617 - +0.1 395,768 + -0.5 395,768 + -0.1 395,769 - +0.2 396,129 - AO356_01750 0.56 -0.5 396,173 + AO356_01750 0.63 -1.0 396,173 + AO356_01750 0.63 -0.1 396,173 + AO356_01750 0.63 -1.1 396,245 + AO356_01750 0.74 -0.2 396,246 - AO356_01750 0.75 -0.8 396,246 - AO356_01750 0.75 -0.6 396,299 + AO356_01750 0.83 +0.1 396,299 + AO356_01750 0.83 -0.4 396,299 + AO356_01750 0.83 +0.0 396,300 - AO356_01750 0.83 +0.1 396,429 + -0.9 396,430 - -0.9 396,433 + +0.9 396,433 + -0.4 396,434 - -0.1 396,434 - -0.3 396,434 - -0.5 396,434 - -1.1 396,445 - +0.3 396,450 + -0.2 396,450 + +0.1 396,483 - +0.4 396,483 - -2.1 396,483 - -1.5 396,571 - +1.4 396,589 - -1.1 396,651 - AO356_01755 0.11 -1.0 396,651 - AO356_01755 0.11 -0.4
Or see this region's nucleotide sequence