Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01030 and AO356_01035 are separated by 15 nucleotides AO356_01035 and AO356_01040 overlap by 4 nucleotides AO356_01040 and AO356_01045 are separated by 226 nucleotides
AO356_01030: AO356_01030 - hemolysin D, at 231,858 to 233,057
_01030
AO356_01035: AO356_01035 - multidrug RND transporter, at 233,073 to 234,542
_01035
AO356_01040: AO356_01040 - MarR family transcriptional regulator, at 234,539 to 235,012
_01040
AO356_01045: AO356_01045 - hypothetical protein, at 235,239 to 238,925
_01045
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.125 kb on - strand, within AO356_01030 at 232.382 kb on - strand, within AO356_01030 at 232.382 kb on - strand, within AO356_01030 at 232.382 kb on - strand, within AO356_01030 at 232.627 kb on + strand, within AO356_01030 at 232.700 kb on - strand, within AO356_01030 at 232.888 kb on + strand, within AO356_01030 at 232.888 kb on + strand, within AO356_01030 at 232.889 kb on - strand, within AO356_01030 at 232.889 kb on - strand, within AO356_01030 at 232.922 kb on - strand, within AO356_01030 at 232.922 kb on - strand, within AO356_01030 at 233.064 kb on + strand at 233.065 kb on - strand at 233.065 kb on - strand at 233.245 kb on + strand, within AO356_01035 at 233.246 kb on - strand, within AO356_01035 at 233.246 kb on - strand, within AO356_01035 at 233.249 kb on + strand, within AO356_01035 at 233.250 kb on - strand, within AO356_01035 at 233.250 kb on - strand, within AO356_01035 at 233.287 kb on + strand, within AO356_01035 at 233.288 kb on - strand, within AO356_01035 at 233.404 kb on + strand, within AO356_01035 at 233.404 kb on + strand, within AO356_01035 at 233.405 kb on - strand, within AO356_01035 at 233.425 kb on + strand, within AO356_01035 at 233.587 kb on + strand, within AO356_01035 at 234.109 kb on + strand, within AO356_01035 at 234.110 kb on - strand, within AO356_01035 at 234.145 kb on + strand, within AO356_01035 at 234.145 kb on + strand, within AO356_01035 at 234.146 kb on - strand, within AO356_01035 at 234.247 kb on + strand, within AO356_01035 at 234.248 kb on - strand, within AO356_01035 at 234.469 kb on + strand at 234.469 kb on + strand at 234.470 kb on - strand at 234.470 kb on - strand at 234.590 kb on + strand, within AO356_01040 at 235.045 kb on + strand at 235.240 kb on + strand at 235.262 kb on + strand at 235.263 kb on - strand at 235.301 kb on - strand at 235.301 kb on - strand at 235.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 232,125 - AO356_01030 0.22 -0.7 232,382 - AO356_01030 0.44 +0.6 232,382 - AO356_01030 0.44 -0.4 232,382 - AO356_01030 0.44 +0.2 232,627 + AO356_01030 0.64 -0.2 232,700 - AO356_01030 0.70 +1.1 232,888 + AO356_01030 0.86 -0.0 232,888 + AO356_01030 0.86 -0.3 232,889 - AO356_01030 0.86 +1.9 232,889 - AO356_01030 0.86 -0.9 232,922 - AO356_01030 0.89 +0.7 232,922 - AO356_01030 0.89 +0.8 233,064 + +0.5 233,065 - -1.8 233,065 - +1.5 233,245 + AO356_01035 0.12 -0.5 233,246 - AO356_01035 0.12 -1.5 233,246 - AO356_01035 0.12 -2.3 233,249 + AO356_01035 0.12 +0.0 233,250 - AO356_01035 0.12 +0.0 233,250 - AO356_01035 0.12 +0.1 233,287 + AO356_01035 0.15 -0.3 233,288 - AO356_01035 0.15 +0.1 233,404 + AO356_01035 0.23 +0.1 233,404 + AO356_01035 0.23 +0.4 233,405 - AO356_01035 0.23 +1.7 233,425 + AO356_01035 0.24 -1.7 233,587 + AO356_01035 0.35 -0.9 234,109 + AO356_01035 0.70 -0.9 234,110 - AO356_01035 0.71 -1.4 234,145 + AO356_01035 0.73 -0.3 234,145 + AO356_01035 0.73 -1.5 234,146 - AO356_01035 0.73 +0.1 234,247 + AO356_01035 0.80 -0.8 234,248 - AO356_01035 0.80 +1.2 234,469 + -0.1 234,469 + -0.2 234,470 - -0.5 234,470 - +0.9 234,590 + AO356_01040 0.11 -1.8 235,045 + -0.6 235,240 + -0.4 235,262 + -1.1 235,263 - +0.8 235,301 - -0.2 235,301 - -0.1 235,321 + -1.4
Or see this region's nucleotide sequence