Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00780

Experiment: Sisomicin 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00775 and AO356_00780 are separated by 32 nucleotidesAO356_00780 and AO356_00785 overlap by 4 nucleotidesAO356_00785 and AO356_00790 are separated by 188 nucleotides AO356_00775: AO356_00775 - glycosyl transferase family 2, at 175,950 to 176,972 _00775 AO356_00780: AO356_00780 - methyltransferase, at 177,005 to 177,751 _00780 AO356_00785: AO356_00785 - polysaccharide synthesis protein GtrA, at 177,748 to 178,155 _00785 AO356_00790: AO356_00790 - epimerase, at 178,344 to 179,441 _00790 Position (kb) 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 176.050 kb on + strandat 176.050 kb on + strandat 176.051 kb on - strandat 176.051 kb on - strandat 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.129 kb on + strand, within AO356_00775at 176.129 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.317 kb on - strand, within AO356_00775at 176.682 kb on + strand, within AO356_00775at 176.682 kb on + strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.691 kb on + strand, within AO356_00775at 176.772 kb on + strand, within AO356_00775at 176.773 kb on - strand, within AO356_00775at 176.781 kb on + strand, within AO356_00775at 176.931 kb on - strandat 177.122 kb on + strand, within AO356_00780at 177.287 kb on + strand, within AO356_00780at 177.287 kb on + strand, within AO356_00780at 177.288 kb on - strand, within AO356_00780at 177.417 kb on - strand, within AO356_00780at 177.515 kb on + strand, within AO356_00780at 177.516 kb on - strand, within AO356_00780at 177.600 kb on - strand, within AO356_00780at 177.642 kb on + strand, within AO356_00780at 177.787 kb on + strandat 177.788 kb on - strandat 177.828 kb on - strand, within AO356_00785at 177.956 kb on - strand, within AO356_00785at 177.956 kb on - strand, within AO356_00785at 177.956 kb on - strand, within AO356_00785at 178.100 kb on + strand, within AO356_00785at 178.100 kb on + strand, within AO356_00785at 178.165 kb on + strandat 178.165 kb on + strandat 178.165 kb on + strandat 178.166 kb on - strandat 178.166 kb on - strandat 178.166 kb on - strandat 178.188 kb on + strandat 178.189 kb on - strandat 178.189 kb on - strandat 178.243 kb on - strandat 178.287 kb on + strandat 178.287 kb on + strandat 178.288 kb on - strandat 178.491 kb on + strand, within AO356_00790at 178.492 kb on - strand, within AO356_00790at 178.492 kb on - strand, within AO356_00790at 178.547 kb on - strand, within AO356_00790at 178.547 kb on - strand, within AO356_00790

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
remove
176,050 + -0.7
176,050 + +1.0
176,051 - -0.6
176,051 - +0.8
176,073 + AO356_00775 0.12 -1.9
176,073 + AO356_00775 0.12 +1.0
176,073 + AO356_00775 0.12 +1.3
176,073 + AO356_00775 0.12 -1.1
176,073 + AO356_00775 0.12 -0.2
176,073 + AO356_00775 0.12 +0.3
176,073 + AO356_00775 0.12 -0.3
176,073 + AO356_00775 0.12 -0.4
176,074 - AO356_00775 0.12 -0.3
176,074 - AO356_00775 0.12 +1.2
176,074 - AO356_00775 0.12 +1.1
176,074 - AO356_00775 0.12 -2.3
176,074 - AO356_00775 0.12 -0.5
176,074 - AO356_00775 0.12 -0.4
176,074 - AO356_00775 0.12 -0.4
176,129 + AO356_00775 0.17 -1.4
176,129 + AO356_00775 0.17 +0.5
176,316 + AO356_00775 0.36 -0.9
176,316 + AO356_00775 0.36 +0.3
176,316 + AO356_00775 0.36 -1.6
176,316 + AO356_00775 0.36 -1.4
176,316 + AO356_00775 0.36 -0.9
176,316 + AO356_00775 0.36 +0.8
176,316 + AO356_00775 0.36 -1.5
176,317 - AO356_00775 0.36 +0.9
176,682 + AO356_00775 0.72 -0.2
176,682 + AO356_00775 0.72 -0.6
176,683 - AO356_00775 0.72 -1.6
176,683 - AO356_00775 0.72 -1.2
176,683 - AO356_00775 0.72 +0.8
176,688 + AO356_00775 0.72 -1.0
176,688 + AO356_00775 0.72 -2.0
176,688 + AO356_00775 0.72 -0.2
176,689 - AO356_00775 0.72 -0.5
176,689 - AO356_00775 0.72 -0.2
176,689 - AO356_00775 0.72 -0.3
176,691 + AO356_00775 0.72 +1.8
176,772 + AO356_00775 0.80 +0.6
176,773 - AO356_00775 0.80 -0.4
176,781 + AO356_00775 0.81 -0.6
176,931 - -1.8
177,122 + AO356_00780 0.16 -0.6
177,287 + AO356_00780 0.38 -1.3
177,287 + AO356_00780 0.38 +0.3
177,288 - AO356_00780 0.38 -1.1
177,417 - AO356_00780 0.55 -0.4
177,515 + AO356_00780 0.68 -0.9
177,516 - AO356_00780 0.68 +0.4
177,600 - AO356_00780 0.80 +0.0
177,642 + AO356_00780 0.85 -0.3
177,787 + -0.7
177,788 - -0.0
177,828 - AO356_00785 0.20 -0.8
177,956 - AO356_00785 0.51 +0.3
177,956 - AO356_00785 0.51 +0.2
177,956 - AO356_00785 0.51 -1.5
178,100 + AO356_00785 0.86 -0.5
178,100 + AO356_00785 0.86 +0.3
178,165 + +0.9
178,165 + +1.1
178,165 + +0.2
178,166 - +0.5
178,166 - -0.0
178,166 - -0.6
178,188 + +0.7
178,189 - +0.8
178,189 - +1.1
178,243 - -1.0
178,287 + +0.1
178,287 + +0.2
178,288 - -1.0
178,491 + AO356_00790 0.13 +0.3
178,492 - AO356_00790 0.13 -0.6
178,492 - AO356_00790 0.13 +0.2
178,547 - AO356_00790 0.18 -2.6
178,547 - AO356_00790 0.18 +0.5

Or see this region's nucleotide sequence