Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00615 and AO356_00620 are separated by 29 nucleotides AO356_00620 and AO356_00625 are separated by 139 nucleotides
AO356_00615: AO356_00615 - choline ABC transporter ATP-binding protein, at 131,629 to 132,852
_00615
AO356_00620: AO356_00620 - LysR family transcriptional regulator, at 132,882 to 133,820
_00620
AO356_00625: AO356_00625 - (Fe-S)-binding protein, at 133,960 to 135,216
_00625
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1 at 132.373 kb on + strand, within AO356_00615 at 132.395 kb on + strand, within AO356_00615 at 132.396 kb on - strand, within AO356_00615 at 132.416 kb on - strand, within AO356_00615 at 132.514 kb on + strand, within AO356_00615 at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 133.116 kb on + strand, within AO356_00620 at 133.116 kb on + strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.243 kb on + strand, within AO356_00620 at 133.244 kb on - strand, within AO356_00620 at 133.244 kb on - strand, within AO356_00620 at 133.326 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.697 kb on + strand, within AO356_00620 at 133.698 kb on - strand, within AO356_00620 at 133.728 kb on + strand at 133.729 kb on - strand at 133.729 kb on - strand at 133.731 kb on + strand at 133.732 kb on - strand at 133.732 kb on - strand at 133.732 kb on - strand at 133.732 kb on - strand at 134.285 kb on - strand, within AO356_00625 at 134.299 kb on + strand, within AO356_00625 at 134.482 kb on + strand, within AO356_00625 at 134.483 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.573 kb on - strand, within AO356_00625 at 134.728 kb on + strand, within AO356_00625 at 134.729 kb on - strand, within AO356_00625
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 132,373 + AO356_00615 0.61 +0.1 132,395 + AO356_00615 0.63 -0.9 132,396 - AO356_00615 0.63 +0.8 132,416 - AO356_00615 0.64 +0.4 132,514 + AO356_00615 0.72 +0.7 132,881 + -0.9 132,881 + +1.0 132,881 + +0.2 132,881 + -0.0 132,881 + +0.7 132,881 + +0.4 132,881 + -2.1 132,881 + +1.2 132,882 - -1.6 132,882 - +0.4 132,882 - -0.1 132,882 - +0.0 132,882 - +1.1 132,882 - +1.0 132,882 - -1.9 133,116 + AO356_00620 0.25 +0.5 133,116 + AO356_00620 0.25 +0.2 133,117 - AO356_00620 0.25 -0.4 133,117 - AO356_00620 0.25 -1.5 133,117 - AO356_00620 0.25 +0.3 133,117 - AO356_00620 0.25 +0.1 133,117 - AO356_00620 0.25 +0.1 133,117 - AO356_00620 0.25 -1.6 133,243 + AO356_00620 0.38 +0.0 133,244 - AO356_00620 0.39 -1.1 133,244 - AO356_00620 0.39 -0.1 133,326 + AO356_00620 0.47 -2.4 133,596 + AO356_00620 0.76 +0.7 133,596 + AO356_00620 0.76 +0.7 133,596 + AO356_00620 0.76 -2.6 133,697 + AO356_00620 0.87 -0.7 133,698 - AO356_00620 0.87 +0.6 133,728 + +0.6 133,729 - -0.8 133,729 - +0.3 133,731 + -0.1 133,732 - -1.3 133,732 - +0.0 133,732 - +0.0 133,732 - +1.2 134,285 - AO356_00625 0.26 +0.6 134,299 + AO356_00625 0.27 -1.0 134,482 + AO356_00625 0.42 +0.8 134,483 - AO356_00625 0.42 +0.9 134,510 - AO356_00625 0.44 -0.6 134,510 - AO356_00625 0.44 -0.5 134,573 - AO356_00625 0.49 -0.1 134,728 + AO356_00625 0.61 -1.3 134,729 - AO356_00625 0.61 +0.4
Or see this region's nucleotide sequence