Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00590

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00585 and AO356_00590 are separated by 216 nucleotidesAO356_00590 and AO356_00595 are separated by 217 nucleotidesAO356_00595 and AO356_00600 are separated by 88 nucleotides AO356_00585: AO356_00585 - LysR family transcriptional regulator, at 126,560 to 127,423 _00585 AO356_00590: AO356_00590 - hypothetical protein, at 127,640 to 127,882 _00590 AO356_00595: AO356_00595 - hypothetical protein, at 128,100 to 128,621 _00595 AO356_00600: AO356_00600 - pyrroline-5-carboxylate reductase, at 128,710 to 129,495 _00600 Position (kb) 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 126.996 kb on - strand, within AO356_00585at 127.008 kb on - strand, within AO356_00585at 127.026 kb on + strand, within AO356_00585at 127.027 kb on - strand, within AO356_00585at 127.027 kb on - strand, within AO356_00585at 127.085 kb on + strand, within AO356_00585at 127.085 kb on + strand, within AO356_00585at 127.085 kb on + strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.086 kb on - strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.091 kb on + strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.092 kb on - strand, within AO356_00585at 127.173 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.193 kb on + strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.194 kb on - strand, within AO356_00585at 127.220 kb on + strand, within AO356_00585at 127.247 kb on + strand, within AO356_00585at 127.247 kb on + strand, within AO356_00585at 127.247 kb on + strandat 127.248 kb on - strand, within AO356_00585at 127.307 kb on + strand, within AO356_00585at 127.308 kb on - strand, within AO356_00585at 127.641 kb on + strandat 127.641 kb on + strandat 127.641 kb on + strandat 127.642 kb on - strandat 127.642 kb on - strandat 127.779 kb on + strand, within AO356_00590at 127.790 kb on + strand, within AO356_00590at 127.790 kb on + strand, within AO356_00590at 127.790 kb on + strand, within AO356_00590at 127.790 kb on + strand, within AO356_00590at 127.791 kb on - strand, within AO356_00590at 127.791 kb on - strand, within AO356_00590at 127.845 kb on + strand, within AO356_00590at 127.846 kb on - strand, within AO356_00590at 128.086 kb on - strandat 128.086 kb on - strandat 128.099 kb on + strandat 128.099 kb on + strandat 128.100 kb on - strandat 128.100 kb on - strandat 128.100 kb on - strandat 128.100 kb on - strandat 128.100 kb on - strandat 128.351 kb on - strand, within AO356_00595at 128.619 kb on + strandat 128.620 kb on - strandat 128.625 kb on + strandat 128.635 kb on - strandat 128.708 kb on + strandat 128.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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126,996 - AO356_00585 0.50 +0.4
127,008 - AO356_00585 0.52 -0.8
127,026 + AO356_00585 0.54 +0.4
127,027 - AO356_00585 0.54 +2.5
127,027 - AO356_00585 0.54 -0.6
127,085 + AO356_00585 0.61 +0.3
127,085 + AO356_00585 0.61 -0.7
127,085 + AO356_00585 0.61 -0.2
127,086 - AO356_00585 0.61 -1.2
127,086 - AO356_00585 0.61 +2.1
127,086 - AO356_00585 0.61 -0.1
127,086 - AO356_00585 0.61 +2.1
127,086 - AO356_00585 0.61 -1.0
127,086 - AO356_00585 0.61 +0.7
127,086 - AO356_00585 0.61 +0.9
127,086 - AO356_00585 0.61 +0.1
127,086 - AO356_00585 0.61 -2.5
127,091 + AO356_00585 0.61 +0.4
127,091 + AO356_00585 0.61 -0.6
127,091 + AO356_00585 0.61 -1.0
127,091 + AO356_00585 0.61 -0.3
127,091 + AO356_00585 0.61 -1.5
127,091 + AO356_00585 0.61 +1.6
127,092 - AO356_00585 0.62 +0.4
127,092 - AO356_00585 0.62 -1.6
127,092 - AO356_00585 0.62 -0.3
127,092 - AO356_00585 0.62 +0.6
127,092 - AO356_00585 0.62 -0.1
127,173 + AO356_00585 0.71 -0.8
127,193 + AO356_00585 0.73 -1.5
127,193 + AO356_00585 0.73 -0.3
127,193 + AO356_00585 0.73 -0.1
127,193 + AO356_00585 0.73 +1.3
127,194 - AO356_00585 0.73 -0.9
127,194 - AO356_00585 0.73 +0.4
127,194 - AO356_00585 0.73 -0.9
127,194 - AO356_00585 0.73 +1.1
127,194 - AO356_00585 0.73 -0.8
127,194 - AO356_00585 0.73 +2.0
127,220 + AO356_00585 0.76 +0.8
127,247 + AO356_00585 0.80 -1.5
127,247 + AO356_00585 0.80 -0.2
127,247 + +2.3
127,248 - AO356_00585 0.80 -1.8
127,307 + AO356_00585 0.86 -1.0
127,308 - AO356_00585 0.87 -1.2
127,641 + +0.1
127,641 + +1.4
127,641 + -0.4
127,642 - +0.6
127,642 - +1.1
127,779 + AO356_00590 0.57 +0.3
127,790 + AO356_00590 0.62 +0.3
127,790 + AO356_00590 0.62 -0.5
127,790 + AO356_00590 0.62 +0.8
127,790 + AO356_00590 0.62 -0.4
127,791 - AO356_00590 0.62 -0.7
127,791 - AO356_00590 0.62 -1.5
127,845 + AO356_00590 0.84 -1.4
127,846 - AO356_00590 0.85 -0.7
128,086 - +0.4
128,086 - +1.7
128,099 + -0.5
128,099 + -0.3
128,100 - +0.2
128,100 - -0.7
128,100 - +1.0
128,100 - +0.0
128,100 - +1.9
128,351 - AO356_00595 0.48 -1.0
128,619 + -1.6
128,620 - +1.0
128,625 + +1.1
128,635 - -1.8
128,708 + +0.6
128,770 + -0.1

Or see this region's nucleotide sequence