Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00305 and AO356_00310 are separated by 211 nucleotides AO356_00310 and AO356_00315 overlap by 8 nucleotides
AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279
_00305
AO356_00310: AO356_00310 - hypothetical protein, at 57,491 to 58,111
_00310
AO356_00315: AO356_00315 - nucleotidyltransferase, at 58,104 to 59,387
_00315
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.560 kb on - strand at 56.560 kb on - strand at 56.579 kb on - strand at 56.595 kb on + strand at 56.596 kb on - strand at 56.716 kb on + strand at 56.717 kb on - strand at 56.787 kb on + strand, within AO356_00305 at 56.850 kb on + strand, within AO356_00305 at 56.851 kb on - strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.885 kb on + strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.886 kb on - strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.903 kb on + strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.904 kb on - strand, within AO356_00305 at 56.927 kb on + strand, within AO356_00305 at 56.928 kb on - strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.944 kb on + strand, within AO356_00305 at 56.965 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.986 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.990 kb on + strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.991 kb on - strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.993 kb on + strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.994 kb on - strand, within AO356_00305 at 56.997 kb on + strand, within AO356_00305 at 57.142 kb on - strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.185 kb on + strand, within AO356_00305 at 57.186 kb on - strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.200 kb on + strand, within AO356_00305 at 57.201 kb on - strand, within AO356_00305 at 57.203 kb on + strand, within AO356_00305 at 57.204 kb on - strand, within AO356_00305 at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.234 kb on + strand at 57.235 kb on - strand at 57.235 kb on - strand at 57.241 kb on + strand at 57.242 kb on - strand at 57.267 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.317 kb on + strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.320 kb on - strand at 57.320 kb on - strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.329 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.338 kb on + strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.339 kb on - strand at 57.347 kb on + strand at 57.348 kb on - strand at 57.394 kb on - strand at 57.394 kb on - strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.434 kb on + strand at 57.435 kb on - strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.436 kb on + strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.437 kb on - strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.438 kb on + strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.439 kb on - strand at 57.454 kb on - strand at 57.483 kb on + strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.484 kb on - strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.488 kb on + strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.489 kb on - strand at 57.490 kb on + strand at 57.490 kb on + strand at 57.533 kb on + strand at 57.534 kb on - strand at 57.546 kb on - strand at 57.572 kb on + strand, within AO356_00310 at 57.707 kb on + strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.708 kb on - strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.716 kb on + strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.717 kb on - strand, within AO356_00310 at 57.719 kb on + strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.720 kb on - strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.740 kb on + strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.741 kb on - strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 57.846 kb on + strand, within AO356_00310 at 58.015 kb on - strand, within AO356_00310 at 58.109 kb on + strand at 58.109 kb on + strand at 58.109 kb on + strand at 58.110 kb on - strand at 58.209 kb on + strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.213 kb on - strand at 58.213 kb on - strand at 58.218 kb on - strand at 58.249 kb on + strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.250 kb on - strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.257 kb on + strand, within AO356_00315 at 58.326 kb on + strand, within AO356_00315 at 58.327 kb on - strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.381 kb on + strand, within AO356_00315 at 58.382 kb on - strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.438 kb on + strand, within AO356_00315 at 58.461 kb on + strand, within AO356_00315 at 58.462 kb on - strand, within AO356_00315 at 58.462 kb on - strand, within AO356_00315 at 58.477 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.506 kb on + strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.507 kb on - strand, within AO356_00315 at 58.512 kb on + strand, within AO356_00315 at 58.693 kb on - strand, within AO356_00315 at 58.719 kb on + strand, within AO356_00315 at 58.773 kb on + strand, within AO356_00315 at 58.774 kb on - strand, within AO356_00315 at 58.847 kb on + strand, within AO356_00315 at 58.847 kb on + strand, within AO356_00315 at 58.886 kb on - strand, within AO356_00315 at 58.886 kb on - strand, within AO356_00315 at 58.931 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.959 kb on + strand, within AO356_00315 at 58.960 kb on - strand, within AO356_00315
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 56,560 - -1.2 56,560 - -1.7 56,579 - +1.8 56,595 + +0.3 56,596 - -0.3 56,716 + -0.0 56,717 - -0.0 56,787 + AO356_00305 0.21 -0.3 56,850 + AO356_00305 0.31 +1.0 56,851 - AO356_00305 0.31 +0.4 56,885 + AO356_00305 0.36 +0.1 56,885 + AO356_00305 0.36 +1.3 56,885 + AO356_00305 0.36 -0.7 56,885 + AO356_00305 0.36 -0.7 56,886 - AO356_00305 0.37 +0.7 56,886 - AO356_00305 0.37 -0.9 56,886 - AO356_00305 0.37 -1.3 56,903 + AO356_00305 0.39 -0.5 56,903 + AO356_00305 0.39 +0.2 56,903 + AO356_00305 0.39 -2.5 56,904 - AO356_00305 0.39 +0.2 56,904 - AO356_00305 0.39 +0.3 56,904 - AO356_00305 0.39 +0.4 56,904 - AO356_00305 0.39 +0.9 56,927 + AO356_00305 0.43 +0.2 56,928 - AO356_00305 0.43 -0.6 56,944 + AO356_00305 0.46 -1.8 56,944 + AO356_00305 0.46 -0.4 56,965 + AO356_00305 0.49 -0.2 56,986 + AO356_00305 0.53 -0.2 56,986 + AO356_00305 0.53 +1.2 56,990 + AO356_00305 0.53 +1.6 56,990 + AO356_00305 0.53 +0.3 56,990 + AO356_00305 0.53 +0.8 56,990 + AO356_00305 0.53 +0.4 56,991 - AO356_00305 0.53 +0.8 56,991 - AO356_00305 0.53 +0.1 56,991 - AO356_00305 0.53 +0.3 56,993 + AO356_00305 0.54 -1.7 56,993 + AO356_00305 0.54 -0.1 56,993 + AO356_00305 0.54 +0.7 56,993 + AO356_00305 0.54 -1.7 56,993 + AO356_00305 0.54 -1.4 56,993 + AO356_00305 0.54 +0.3 56,994 - AO356_00305 0.54 -0.2 56,994 - AO356_00305 0.54 -1.0 56,994 - AO356_00305 0.54 -1.1 56,997 + AO356_00305 0.54 -0.9 57,142 - AO356_00305 0.78 +0.1 57,185 + AO356_00305 0.85 -0.6 57,185 + AO356_00305 0.85 +0.3 57,185 + AO356_00305 0.85 +1.2 57,185 + AO356_00305 0.85 -0.6 57,185 + AO356_00305 0.85 -0.6 57,186 - AO356_00305 0.85 +0.1 57,200 + AO356_00305 0.87 +0.4 57,200 + AO356_00305 0.87 -1.7 57,200 + AO356_00305 0.87 +0.4 57,200 + AO356_00305 0.87 -0.6 57,201 - AO356_00305 0.87 -1.1 57,203 + AO356_00305 0.88 +0.3 57,204 - AO356_00305 0.88 +0.1 57,234 + -0.6 57,234 + -0.2 57,234 + +1.3 57,234 + -0.2 57,235 - -0.6 57,235 - -0.4 57,241 + +0.2 57,242 - -2.1 57,267 + -0.3 57,317 + +0.6 57,317 + -0.4 57,317 + +0.1 57,317 + -0.5 57,317 + +1.5 57,318 - +0.0 57,318 - -0.5 57,318 - -0.5 57,318 - +0.9 57,320 - +0.6 57,320 - +0.4 57,329 + -2.3 57,329 + +0.3 57,329 + -1.1 57,329 + -0.9 57,338 + +0.7 57,338 + +0.3 57,338 + -2.1 57,339 - -1.9 57,339 - -0.7 57,339 - +0.5 57,339 - +1.9 57,347 + -0.8 57,348 - +0.9 57,394 - -1.8 57,394 - -0.1 57,434 + -2.0 57,434 + +1.4 57,434 + +0.9 57,434 + +0.9 57,434 + -0.1 57,434 + +0.9 57,434 + -0.3 57,435 - +0.8 57,436 + +0.5 57,436 + +0.4 57,436 + +0.5 57,436 + -0.5 57,436 + -0.6 57,437 - +1.9 57,437 - +0.1 57,437 - +1.0 57,437 - -0.6 57,437 - +1.3 57,437 - -0.1 57,437 - +0.6 57,437 - -0.6 57,438 + -0.3 57,438 + +0.6 57,438 + +2.1 57,438 + -0.6 57,438 + +0.5 57,439 - -1.6 57,439 - +0.0 57,439 - +0.2 57,439 - +0.9 57,439 - -0.8 57,439 - -1.1 57,439 - -0.2 57,439 - +0.2 57,439 - +0.5 57,439 - -2.4 57,439 - -0.7 57,439 - -0.1 57,439 - -0.4 57,454 - -1.4 57,483 + +0.1 57,484 - +0.1 57,484 - -0.3 57,484 - -1.2 57,488 + +1.2 57,488 + -0.5 57,488 + -0.5 57,488 + +0.3 57,488 + -1.0 57,489 - +0.1 57,489 - -0.9 57,489 - -0.4 57,490 + -1.5 57,490 + +1.6 57,533 + -1.0 57,534 - -0.6 57,546 - +2.2 57,572 + AO356_00310 0.13 +0.2 57,707 + AO356_00310 0.35 +2.4 57,708 - AO356_00310 0.35 +0.2 57,708 - AO356_00310 0.35 -0.1 57,716 + AO356_00310 0.36 -0.4 57,716 + AO356_00310 0.36 +0.3 57,716 + AO356_00310 0.36 -0.3 57,716 + AO356_00310 0.36 +0.2 57,717 - AO356_00310 0.36 +0.4 57,717 - AO356_00310 0.36 +1.2 57,717 - AO356_00310 0.36 +0.5 57,717 - AO356_00310 0.36 +0.3 57,719 + AO356_00310 0.37 +0.1 57,720 - AO356_00310 0.37 +0.1 57,720 - AO356_00310 0.37 -0.0 57,740 + AO356_00310 0.40 +1.6 57,740 + AO356_00310 0.40 -0.0 57,740 + AO356_00310 0.40 -0.5 57,741 - AO356_00310 0.40 -0.9 57,741 - AO356_00310 0.40 -0.6 57,846 + AO356_00310 0.57 -0.3 57,846 + AO356_00310 0.57 +0.5 58,015 - AO356_00310 0.84 +0.4 58,109 + -0.0 58,109 + -1.0 58,109 + +0.8 58,110 - +0.8 58,209 + +0.1 58,212 + +0.6 58,212 + -0.5 58,213 - -0.3 58,213 - +0.2 58,218 - -1.9 58,249 + AO356_00315 0.11 -0.6 58,250 - AO356_00315 0.11 +0.6 58,250 - AO356_00315 0.11 -2.2 58,250 - AO356_00315 0.11 -1.0 58,250 - AO356_00315 0.11 -1.2 58,257 + AO356_00315 0.12 -0.7 58,257 + AO356_00315 0.12 -0.2 58,326 + AO356_00315 0.17 +0.7 58,327 - AO356_00315 0.17 +0.3 58,381 + AO356_00315 0.22 +1.3 58,381 + AO356_00315 0.22 +0.2 58,381 + AO356_00315 0.22 -0.5 58,381 + AO356_00315 0.22 -0.3 58,382 - AO356_00315 0.22 +1.0 58,438 + AO356_00315 0.26 +0.0 58,438 + AO356_00315 0.26 -0.3 58,438 + AO356_00315 0.26 -1.4 58,438 + AO356_00315 0.26 +2.0 58,438 + AO356_00315 0.26 -1.3 58,461 + AO356_00315 0.28 +0.5 58,462 - AO356_00315 0.28 -0.0 58,462 - AO356_00315 0.28 -0.1 58,477 + AO356_00315 0.29 -1.1 58,506 + AO356_00315 0.31 -0.6 58,506 + AO356_00315 0.31 +0.9 58,506 + AO356_00315 0.31 -0.9 58,506 + AO356_00315 0.31 +0.2 58,506 + AO356_00315 0.31 +1.3 58,507 - AO356_00315 0.31 +1.0 58,507 - AO356_00315 0.31 +1.4 58,507 - AO356_00315 0.31 -0.6 58,507 - AO356_00315 0.31 -1.4 58,507 - AO356_00315 0.31 +1.9 58,507 - AO356_00315 0.31 -0.0 58,507 - AO356_00315 0.31 +0.1 58,507 - AO356_00315 0.31 +0.8 58,512 + AO356_00315 0.32 -1.8 58,693 - AO356_00315 0.46 -0.4 58,719 + AO356_00315 0.48 -0.0 58,773 + AO356_00315 0.52 -0.6 58,774 - AO356_00315 0.52 -1.1 58,847 + AO356_00315 0.58 +0.7 58,847 + AO356_00315 0.58 +1.8 58,886 - AO356_00315 0.61 -1.9 58,886 - AO356_00315 0.61 -0.6 58,931 + AO356_00315 0.64 +1.4 58,959 + AO356_00315 0.67 -0.6 58,959 + AO356_00315 0.67 +1.4 58,959 + AO356_00315 0.67 -0.3 58,960 - AO356_00315 0.67 -0.3
Or see this region's nucleotide sequence