Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00185

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00180 and AO356_00185 are separated by 89 nucleotidesAO356_00185 and AO356_00190 are separated by 74 nucleotides AO356_00180: AO356_00180 - conjugal transfer protein TraG, at 31,945 to 34,050 _00180 AO356_00185: AO356_00185 - hypothetical protein, at 34,140 to 34,871 _00185 AO356_00190: AO356_00190 - hypothetical protein, at 34,946 to 36,082 _00190 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1at 33.148 kb on + strand, within AO356_00180at 33.149 kb on - strand, within AO356_00180at 33.149 kb on - strand, within AO356_00180at 33.195 kb on + strand, within AO356_00180at 33.195 kb on + strand, within AO356_00180at 33.195 kb on + strand, within AO356_00180at 33.195 kb on + strand, within AO356_00180at 33.218 kb on + strand, within AO356_00180at 33.232 kb on + strand, within AO356_00180at 33.242 kb on + strand, within AO356_00180at 33.242 kb on + strand, within AO356_00180at 33.242 kb on + strand, within AO356_00180at 33.243 kb on - strand, within AO356_00180at 33.243 kb on - strand, within AO356_00180at 33.302 kb on - strand, within AO356_00180at 33.394 kb on + strand, within AO356_00180at 33.551 kb on - strand, within AO356_00180at 33.551 kb on - strand, within AO356_00180at 33.551 kb on - strand, within AO356_00180at 33.671 kb on + strand, within AO356_00180at 33.671 kb on + strand, within AO356_00180at 33.691 kb on - strand, within AO356_00180at 33.701 kb on + strand, within AO356_00180at 33.701 kb on + strand, within AO356_00180at 33.702 kb on - strand, within AO356_00180at 33.826 kb on - strand, within AO356_00180at 33.826 kb on - strand, within AO356_00180at 33.836 kb on + strand, within AO356_00180at 33.891 kb on + strandat 33.891 kb on + strandat 33.892 kb on - strandat 33.924 kb on + strandat 33.925 kb on - strandat 33.925 kb on - strandat 33.925 kb on - strandat 33.948 kb on + strandat 33.948 kb on + strandat 33.971 kb on - strandat 34.048 kb on + strandat 34.048 kb on + strandat 34.049 kb on - strandat 34.051 kb on + strandat 34.052 kb on - strandat 34.052 kb on - strandat 34.080 kb on + strandat 34.080 kb on + strandat 34.081 kb on - strandat 34.081 kb on - strandat 34.081 kb on - strandat 34.560 kb on + strand, within AO356_00185at 34.560 kb on + strand, within AO356_00185at 34.561 kb on - strand, within AO356_00185at 34.561 kb on - strand, within AO356_00185at 34.565 kb on + strand, within AO356_00185at 34.591 kb on + strand, within AO356_00185at 34.591 kb on + strand, within AO356_00185at 34.628 kb on + strand, within AO356_00185at 34.629 kb on - strand, within AO356_00185at 34.658 kb on - strand, within AO356_00185at 34.707 kb on + strand, within AO356_00185at 34.730 kb on - strand, within AO356_00185at 34.758 kb on - strand, within AO356_00185at 34.762 kb on - strand, within AO356_00185at 34.762 kb on - strand, within AO356_00185at 34.765 kb on + strand, within AO356_00185at 34.863 kb on + strandat 34.870 kb on - strandat 34.943 kb on + strandat 34.944 kb on - strandat 34.944 kb on - strandat 34.947 kb on + strandat 34.947 kb on + strandat 34.948 kb on - strandat 35.196 kb on + strand, within AO356_00190at 35.196 kb on + strand, within AO356_00190at 35.196 kb on + strand, within AO356_00190at 35.196 kb on + strand, within AO356_00190at 35.316 kb on + strand, within AO356_00190at 35.335 kb on - strand, within AO356_00190at 35.335 kb on - strand, within AO356_00190at 35.443 kb on + strand, within AO356_00190at 35.454 kb on + strand, within AO356_00190at 35.454 kb on + strand, within AO356_00190at 35.487 kb on - strand, within AO356_00190at 35.588 kb on + strand, within AO356_00190at 35.656 kb on + strand, within AO356_00190at 35.657 kb on - strand, within AO356_00190at 35.657 kb on - strand, within AO356_00190at 35.657 kb on - strand, within AO356_00190at 35.663 kb on - strand, within AO356_00190at 35.663 kb on - strand, within AO356_00190at 35.708 kb on + strand, within AO356_00190at 35.709 kb on - strand, within AO356_00190at 35.709 kb on - strand, within AO356_00190at 35.709 kb on - strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.796 kb on + strand, within AO356_00190at 35.797 kb on - strand, within AO356_00190at 35.801 kb on + strand, within AO356_00190at 35.802 kb on - strand, within AO356_00190at 35.802 kb on - strand, within AO356_00190at 35.803 kb on + strand, within AO356_00190at 35.803 kb on + strand, within AO356_00190at 35.848 kb on + strand, within AO356_00190at 35.848 kb on + strand, within AO356_00190at 35.849 kb on - strand, within AO356_00190

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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33,148 + AO356_00180 0.57 +1.2
33,149 - AO356_00180 0.57 -0.6
33,149 - AO356_00180 0.57 -0.7
33,195 + AO356_00180 0.59 -0.2
33,195 + AO356_00180 0.59 -0.7
33,195 + AO356_00180 0.59 -0.9
33,195 + AO356_00180 0.59 -0.1
33,218 + AO356_00180 0.60 -0.9
33,232 + AO356_00180 0.61 -0.9
33,242 + AO356_00180 0.62 +0.4
33,242 + AO356_00180 0.62 -0.5
33,242 + AO356_00180 0.62 +0.6
33,243 - AO356_00180 0.62 +0.1
33,243 - AO356_00180 0.62 +0.7
33,302 - AO356_00180 0.64 +0.9
33,394 + AO356_00180 0.69 +1.1
33,551 - AO356_00180 0.76 -0.4
33,551 - AO356_00180 0.76 -0.1
33,551 - AO356_00180 0.76 +1.2
33,671 + AO356_00180 0.82 -1.3
33,671 + AO356_00180 0.82 -0.3
33,691 - AO356_00180 0.83 -1.3
33,701 + AO356_00180 0.83 +1.1
33,701 + AO356_00180 0.83 +0.2
33,702 - AO356_00180 0.83 +0.5
33,826 - AO356_00180 0.89 -0.1
33,826 - AO356_00180 0.89 +0.6
33,836 + AO356_00180 0.90 -1.3
33,891 + -0.5
33,891 + -1.3
33,892 - +0.3
33,924 + -0.9
33,925 - -0.9
33,925 - -0.5
33,925 - -0.4
33,948 + -1.7
33,948 + -2.4
33,971 - -0.4
34,048 + +0.1
34,048 + +1.3
34,049 - -0.4
34,051 + +1.2
34,052 - -0.8
34,052 - -1.0
34,080 + -0.5
34,080 + -0.4
34,081 - +0.6
34,081 - +0.3
34,081 - +0.6
34,560 + AO356_00185 0.57 +0.3
34,560 + AO356_00185 0.57 +0.1
34,561 - AO356_00185 0.58 -0.3
34,561 - AO356_00185 0.58 +0.8
34,565 + AO356_00185 0.58 -0.4
34,591 + AO356_00185 0.62 -0.7
34,591 + AO356_00185 0.62 +0.7
34,628 + AO356_00185 0.67 -0.4
34,629 - AO356_00185 0.67 -0.2
34,658 - AO356_00185 0.71 +0.3
34,707 + AO356_00185 0.77 +0.1
34,730 - AO356_00185 0.81 +0.9
34,758 - AO356_00185 0.84 -1.5
34,762 - AO356_00185 0.85 -0.7
34,762 - AO356_00185 0.85 -0.5
34,765 + AO356_00185 0.85 -0.4
34,863 + +0.3
34,870 - +1.7
34,943 + -1.4
34,944 - -1.7
34,944 - -0.6
34,947 + +0.2
34,947 + +0.8
34,948 - -0.4
35,196 + AO356_00190 0.22 -0.2
35,196 + AO356_00190 0.22 -1.4
35,196 + AO356_00190 0.22 -0.2
35,196 + AO356_00190 0.22 -1.1
35,316 + AO356_00190 0.33 +0.2
35,335 - AO356_00190 0.34 +0.5
35,335 - AO356_00190 0.34 -0.8
35,443 + AO356_00190 0.44 +0.6
35,454 + AO356_00190 0.45 -1.3
35,454 + AO356_00190 0.45 -0.6
35,487 - AO356_00190 0.48 -0.7
35,588 + AO356_00190 0.56 -0.5
35,656 + AO356_00190 0.62 +0.4
35,657 - AO356_00190 0.63 -0.6
35,657 - AO356_00190 0.63 +0.7
35,657 - AO356_00190 0.63 -0.6
35,663 - AO356_00190 0.63 -0.2
35,663 - AO356_00190 0.63 +1.6
35,708 + AO356_00190 0.67 -0.7
35,709 - AO356_00190 0.67 +1.1
35,709 - AO356_00190 0.67 +1.0
35,709 - AO356_00190 0.67 +0.2
35,796 + AO356_00190 0.75 +0.3
35,796 + AO356_00190 0.75 -0.8
35,796 + AO356_00190 0.75 +0.8
35,796 + AO356_00190 0.75 -0.0
35,796 + AO356_00190 0.75 -1.8
35,796 + AO356_00190 0.75 +0.7
35,797 - AO356_00190 0.75 -0.1
35,801 + AO356_00190 0.75 -1.8
35,802 - AO356_00190 0.75 -1.0
35,802 - AO356_00190 0.75 +0.1
35,803 + AO356_00190 0.75 +0.4
35,803 + AO356_00190 0.75 -2.3
35,848 + AO356_00190 0.79 +1.3
35,848 + AO356_00190 0.79 -0.3
35,849 - AO356_00190 0.79 -0.3

Or see this region's nucleotide sequence