Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3133

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3132 and DvMF_3133 are separated by 217 nucleotidesDvMF_3133 and DvMF_3134 are separated by 514 nucleotides DvMF_3132: DvMF_3132 - cytochrome c assembly protein (RefSeq), at 3,950,795 to 3,952,720 _3132 DvMF_3133: DvMF_3133 - cytochrome c-type biogenesis protein CcmE (RefSeq), at 3,952,938 to 3,953,360 _3133 DvMF_3134: DvMF_3134 - protein of unknown function DUF21 (RefSeq), at 3,953,875 to 3,954,912 _3134 Position (kb) 3952 3953 3954Strain fitness (log2 ratio) -1 0 1at 3952.744 kb on - strandat 3952.950 kb on - strandat 3953.474 kb on + strandat 3953.513 kb on - strandat 3953.567 kb on - strandat 3953.617 kb on - strandat 3953.713 kb on - strandat 3953.713 kb on - strandat 3954.122 kb on + strand, within DvMF_3134at 3954.161 kb on + strand, within DvMF_3134at 3954.263 kb on + strand, within DvMF_3134

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,952,744 - -1.2
3,952,950 - +0.4
3,953,474 + -1.2
3,953,513 - -0.6
3,953,567 - -0.7
3,953,617 - -0.1
3,953,713 - -0.4
3,953,713 - -0.8
3,954,122 + DvMF_3134 0.24 -0.4
3,954,161 + DvMF_3134 0.28 -0.1
3,954,263 + DvMF_3134 0.37 -0.5

Or see this region's nucleotide sequence