Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2309

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2308 and DvMF_2309 are separated by 75 nucleotidesDvMF_2309 and DvMF_2310 are separated by 186 nucleotides DvMF_2308: DvMF_2308 - KpsF/GutQ family protein (RefSeq), at 2,901,848 to 2,902,849 _2308 DvMF_2309: DvMF_2309 - thioesterase superfamily protein (RefSeq), at 2,902,925 to 2,903,452 _2309 DvMF_2310: DvMF_2310 - hypothetical protein (RefSeq), at 2,903,639 to 2,904,985 _2310 Position (kb) 2902 2903 2904Strain fitness (log2 ratio) -1 0 1at 2903.155 kb on - strand, within DvMF_2309at 2903.156 kb on + strand, within DvMF_2309at 2903.720 kb on - strandat 2904.009 kb on - strand, within DvMF_2310at 2904.251 kb on + strand, within DvMF_2310at 2904.251 kb on + strand, within DvMF_2310at 2904.274 kb on + strand, within DvMF_2310at 2904.432 kb on + strand, within DvMF_2310

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,903,155 - DvMF_2309 0.44 -0.7
2,903,156 + DvMF_2309 0.44 +0.4
2,903,720 - -0.3
2,904,009 - DvMF_2310 0.27 +0.4
2,904,251 + DvMF_2310 0.45 +1.1
2,904,251 + DvMF_2310 0.45 -1.2
2,904,274 + DvMF_2310 0.47 -0.1
2,904,432 + DvMF_2310 0.59 -0.4

Or see this region's nucleotide sequence