Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2308

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2307 and DvMF_2308 are separated by 407 nucleotidesDvMF_2308 and DvMF_2309 are separated by 75 nucleotidesDvMF_2309 and DvMF_2310 are separated by 186 nucleotides DvMF_2307: DvMF_2307 - amidophosphoribosyltransferase (RefSeq), at 2,900,037 to 2,901,440 _2307 DvMF_2308: DvMF_2308 - KpsF/GutQ family protein (RefSeq), at 2,901,848 to 2,902,849 _2308 DvMF_2309: DvMF_2309 - thioesterase superfamily protein (RefSeq), at 2,902,925 to 2,903,452 _2309 DvMF_2310: DvMF_2310 - hypothetical protein (RefSeq), at 2,903,639 to 2,904,985 _2310 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2900.957 kb on + strand, within DvMF_2307at 2900.957 kb on - strand, within DvMF_2307at 2901.041 kb on + strand, within DvMF_2307at 2901.049 kb on - strand, within DvMF_2307at 2901.605 kb on - strandat 2901.672 kb on - strandat 2901.714 kb on - strandat 2901.714 kb on - strandat 2901.714 kb on - strandat 2903.155 kb on - strand, within DvMF_2309at 2903.156 kb on + strand, within DvMF_2309at 2903.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,900,957 + DvMF_2307 0.66 -5.2
2,900,957 - DvMF_2307 0.66 -5.4
2,901,041 + DvMF_2307 0.72 -4.5
2,901,049 - DvMF_2307 0.72 -4.0
2,901,605 - -0.7
2,901,672 - +1.1
2,901,714 - -0.6
2,901,714 - +0.8
2,901,714 - -0.6
2,903,155 - DvMF_2309 0.44 -0.7
2,903,156 + DvMF_2309 0.44 +0.4
2,903,720 - -0.3

Or see this region's nucleotide sequence