Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1990

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1989 and DvMF_1990 are separated by 400 nucleotidesDvMF_1990 and DvMF_1991 are separated by 35 nucleotidesDvMF_1991 and DvMF_1992 are separated by 332 nucleotides DvMF_1989: DvMF_1989 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,462,844 to 2,464,544 _1989 DvMF_1990: DvMF_1990 - Pyruvate, water dikinase (RefSeq), at 2,464,945 to 2,467,740 _1990 DvMF_1991: DvMF_1991 - response regulator receiver protein (RefSeq), at 2,467,776 to 2,468,237 _1991 DvMF_1992: DvMF_1992 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,468,570 to 2,469,688 _1992 Position (kb) 2464 2465 2466 2467 2468Strain fitness (log2 ratio) -1 0 1at 2463.987 kb on + strand, within DvMF_1989at 2464.033 kb on + strand, within DvMF_1989at 2464.041 kb on - strand, within DvMF_1989at 2464.203 kb on + strand, within DvMF_1989at 2464.291 kb on + strand, within DvMF_1989at 2464.313 kb on + strand, within DvMF_1989at 2464.318 kb on + strand, within DvMF_1989at 2464.370 kb on - strand, within DvMF_1989at 2464.650 kb on + strandat 2465.038 kb on - strandat 2465.391 kb on + strand, within DvMF_1990at 2465.662 kb on - strand, within DvMF_1990at 2465.836 kb on - strand, within DvMF_1990at 2465.915 kb on - strand, within DvMF_1990at 2465.967 kb on - strand, within DvMF_1990at 2465.996 kb on - strand, within DvMF_1990at 2466.341 kb on + strand, within DvMF_1990at 2466.522 kb on + strand, within DvMF_1990at 2466.565 kb on - strand, within DvMF_1990at 2466.602 kb on + strand, within DvMF_1990at 2466.602 kb on + strand, within DvMF_1990at 2466.610 kb on - strand, within DvMF_1990at 2466.610 kb on - strand, within DvMF_1990at 2466.752 kb on - strand, within DvMF_1990at 2466.779 kb on + strand, within DvMF_1990at 2466.889 kb on - strand, within DvMF_1990at 2466.890 kb on + strand, within DvMF_1990at 2467.388 kb on - strand, within DvMF_1990at 2467.510 kb on - strandat 2467.512 kb on + strandat 2468.281 kb on + strandat 2468.388 kb on + strandat 2468.388 kb on + strandat 2468.404 kb on - strandat 2468.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,463,987 + DvMF_1989 0.67 -0.7
2,464,033 + DvMF_1989 0.70 +0.5
2,464,041 - DvMF_1989 0.70 -0.5
2,464,203 + DvMF_1989 0.80 -0.9
2,464,291 + DvMF_1989 0.85 -0.3
2,464,313 + DvMF_1989 0.86 +0.4
2,464,318 + DvMF_1989 0.87 -0.5
2,464,370 - DvMF_1989 0.90 -0.6
2,464,650 + -0.1
2,465,038 - +0.3
2,465,391 + DvMF_1990 0.16 -0.3
2,465,662 - DvMF_1990 0.26 -0.3
2,465,836 - DvMF_1990 0.32 -0.3
2,465,915 - DvMF_1990 0.35 -0.2
2,465,967 - DvMF_1990 0.37 -0.9
2,465,996 - DvMF_1990 0.38 -0.2
2,466,341 + DvMF_1990 0.50 -0.9
2,466,522 + DvMF_1990 0.56 -1.2
2,466,565 - DvMF_1990 0.58 -1.0
2,466,602 + DvMF_1990 0.59 -1.0
2,466,602 + DvMF_1990 0.59 -0.6
2,466,610 - DvMF_1990 0.60 -0.3
2,466,610 - DvMF_1990 0.60 -0.5
2,466,752 - DvMF_1990 0.65 -0.5
2,466,779 + DvMF_1990 0.66 -0.7
2,466,889 - DvMF_1990 0.70 -1.7
2,466,890 + DvMF_1990 0.70 -1.2
2,467,388 - DvMF_1990 0.87 -0.1
2,467,510 - -1.5
2,467,512 + -0.2
2,468,281 + -0.8
2,468,388 + -0.6
2,468,388 + -0.3
2,468,404 - -0.3
2,468,423 + -0.2

Or see this region's nucleotide sequence