Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1706

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1705 and DvMF_1706 are separated by 373 nucleotidesDvMF_1706 and DvMF_1707 are separated by 306 nucleotides DvMF_1705: DvMF_1705 - 4-alpha-glucanotransferase (RefSeq), at 2,081,060 to 2,082,598 _1705 DvMF_1706: DvMF_1706 - glucosamine/fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 2,082,972 to 2,084,795 _1706 DvMF_1707: DvMF_1707 - protein of unknown function UPF0118 (RefSeq), at 2,085,102 to 2,086,616 _1707 Position (kb) 2082 2083 2084 2085Strain fitness (log2 ratio) -2 -1 0 1at 2081.995 kb on + strand, within DvMF_1705at 2082.003 kb on - strand, within DvMF_1705at 2082.083 kb on - strand, within DvMF_1705at 2082.324 kb on - strand, within DvMF_1705at 2082.372 kb on + strand, within DvMF_1705at 2082.421 kb on - strand, within DvMF_1705at 2082.448 kb on + strandat 2082.539 kb on - strandat 2082.647 kb on + strandat 2082.662 kb on + strandat 2082.776 kb on + strandat 2082.827 kb on - strandat 2084.977 kb on - strandat 2085.329 kb on - strand, within DvMF_1707at 2085.377 kb on + strand, within DvMF_1707at 2085.378 kb on - strand, within DvMF_1707at 2085.400 kb on + strand, within DvMF_1707at 2085.452 kb on - strand, within DvMF_1707at 2085.457 kb on + strand, within DvMF_1707at 2085.783 kb on - strand, within DvMF_1707

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,081,995 + DvMF_1705 0.61 -1.2
2,082,003 - DvMF_1705 0.61 -0.3
2,082,083 - DvMF_1705 0.66 -0.8
2,082,324 - DvMF_1705 0.82 -2.1
2,082,372 + DvMF_1705 0.85 -1.1
2,082,421 - DvMF_1705 0.88 -1.3
2,082,448 + -0.6
2,082,539 - -0.7
2,082,647 + -0.1
2,082,662 + -0.2
2,082,776 + -0.2
2,082,827 - -0.7
2,084,977 - -0.6
2,085,329 - DvMF_1707 0.15 -0.7
2,085,377 + DvMF_1707 0.18 -0.3
2,085,378 - DvMF_1707 0.18 -0.6
2,085,400 + DvMF_1707 0.20 +0.1
2,085,452 - DvMF_1707 0.23 +0.0
2,085,457 + DvMF_1707 0.23 -1.3
2,085,783 - DvMF_1707 0.45 -0.8

Or see this region's nucleotide sequence