Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1462

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1461 and DvMF_1462 are separated by 108 nucleotidesDvMF_1462 and DvMF_1463 are separated by 371 nucleotides DvMF_1461: DvMF_1461 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,790,674 to 1,792,149 _1461 DvMF_1462: DvMF_1462 - phosphoglycerate mutase 1 family (RefSeq), at 1,792,258 to 1,793,007 _1462 DvMF_1463: DvMF_1463 - response regulator receiver protein (RefSeq), at 1,793,379 to 1,794,743 _1463 Position (kb) 1792 1793 1794Strain fitness (log2 ratio) -1 0 1at 1792.338 kb on + strand, within DvMF_1462at 1792.442 kb on + strand, within DvMF_1462at 1792.745 kb on + strand, within DvMF_1462at 1792.901 kb on - strand, within DvMF_1462at 1792.901 kb on - strand, within DvMF_1462at 1792.901 kb on - strand, within DvMF_1462at 1792.968 kb on + strandat 1792.976 kb on - strandat 1793.022 kb on + strandat 1793.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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1,792,338 + DvMF_1462 0.11 -0.3
1,792,442 + DvMF_1462 0.25 +0.1
1,792,745 + DvMF_1462 0.65 +0.0
1,792,901 - DvMF_1462 0.86 -0.6
1,792,901 - DvMF_1462 0.86 -0.3
1,792,901 - DvMF_1462 0.86 -0.4
1,792,968 + -0.3
1,792,976 - -0.3
1,793,022 + +0.0
1,793,285 - -0.9

Or see this region's nucleotide sequence