Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0418

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0417 and DvMF_0418 are separated by 85 nucleotidesDvMF_0418 and DvMF_0419 are separated by 96 nucleotides DvMF_0417: DvMF_0417 - pyruvate carboxylase (RefSeq), at 489,026 to 492,730 _0417 DvMF_0418: DvMF_0418 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 492,816 to 493,985 _0418 DvMF_0419: DvMF_0419 - metal dependent phosphohydrolase (RefSeq), at 494,082 to 495,497 _0419 Position (kb) 492 493 494Strain fitness (log2 ratio) -2 -1 0 1at 492.783 kb on - strandat 492.955 kb on - strand, within DvMF_0418at 493.728 kb on - strand, within DvMF_0418at 493.745 kb on - strand, within DvMF_0418at 493.887 kb on + strandat 493.887 kb on + strandat 493.923 kb on - strandat 494.116 kb on + strandat 494.143 kb on + strandat 494.250 kb on - strand, within DvMF_0419at 494.575 kb on - strand, within DvMF_0419at 494.582 kb on - strand, within DvMF_0419at 494.604 kb on - strand, within DvMF_0419at 494.708 kb on - strand, within DvMF_0419at 494.739 kb on + strand, within DvMF_0419at 494.744 kb on + strand, within DvMF_0419at 494.863 kb on + strand, within DvMF_0419at 494.868 kb on + strand, within DvMF_0419at 494.876 kb on - strand, within DvMF_0419

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
492,783 - -0.9
492,955 - DvMF_0418 0.12 -1.2
493,728 - DvMF_0418 0.78 -2.2
493,745 - DvMF_0418 0.79 -0.7
493,887 + -0.6
493,887 + +0.2
493,923 - -0.4
494,116 + +0.9
494,143 + -0.2
494,250 - DvMF_0419 0.12 -0.2
494,575 - DvMF_0419 0.35 +0.1
494,582 - DvMF_0419 0.35 -0.6
494,604 - DvMF_0419 0.37 +0.6
494,708 - DvMF_0419 0.44 +0.1
494,739 + DvMF_0419 0.46 -0.7
494,744 + DvMF_0419 0.47 +0.4
494,863 + DvMF_0419 0.55 -0.2
494,868 + DvMF_0419 0.56 -0.4
494,876 - DvMF_0419 0.56 -1.0

Or see this region's nucleotide sequence