Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0417

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0416 and DvMF_0417 are separated by 254 nucleotidesDvMF_0417 and DvMF_0418 are separated by 85 nucleotides DvMF_0416: DvMF_0416 - pyruvate phosphate dikinase PEP/pyruvate-binding (RefSeq), at 485,193 to 488,771 _0416 DvMF_0417: DvMF_0417 - pyruvate carboxylase (RefSeq), at 489,026 to 492,730 _0417 DvMF_0418: DvMF_0418 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 492,816 to 493,985 _0418 Position (kb) 489 490 491 492 493Strain fitness (log2 ratio) -2 -1 0 1at 488.849 kb on + strandat 488.890 kb on - strandat 489.014 kb on + strandat 492.783 kb on - strandat 492.955 kb on - strand, within DvMF_0418at 493.728 kb on - strand, within DvMF_0418

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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488,849 + +0.2
488,890 - -1.3
489,014 + -1.5
492,783 - -0.9
492,955 - DvMF_0418 0.12 -1.2
493,728 - DvMF_0418 0.78 -2.2

Or see this region's nucleotide sequence