Strain Fitness in Shewanella loihica PV-4 around Shew_3818

Experiment: Carbenicillin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.002 mg/ml
4,544,183	-		Shew_3816	0.14	-0.4
4,544,403	-		Shew_3816	0.55	-0.3
4,544,408	-		Shew_3816	0.55	-1.7
4,544,413	-		Shew_3816	0.56	-0.1
4,544,506	+		Shew_3816	0.73	-0.4
4,544,507	-		Shew_3816	0.74	+0.1
4,544,538	-		Shew_3816	0.79	+0.5
4,544,608	-				-0.1
4,544,623	+				+0.2
4,544,771	+				-0.1
4,544,771	+				+0.4
4,544,771	+				+0.1
4,544,771	+				-0.4
4,544,779	-				+0.5
4,544,838	+		Shew_3817	0.25	+0.5
4,544,838	+		Shew_3817	0.25	-0.3
4,544,843	+		Shew_3817	0.26	+1.0
4,544,862	+		Shew_3817	0.31	-0.4
4,544,870	-		Shew_3817	0.34	+0.2
4,544,917	-		Shew_3817	0.47	+0.5
4,544,917	-		Shew_3817	0.47	-0.3
4,544,927	-		Shew_3817	0.50	-0.7
4,545,085	-				+0.5
4,545,125	+				-0.5
4,545,125	+				-0.6
4,545,178	+				-0.2
4,545,515	+		Shew_3818	0.18	+0.5
4,545,523	-		Shew_3818	0.18	+0.2
4,545,708	-		Shew_3818	0.27	+0.2
4,545,809	+		Shew_3818	0.31	+0.0
4,545,985	+		Shew_3818	0.39	+0.5
4,546,052	-		Shew_3818	0.42	+0.1
4,546,066	-		Shew_3818	0.43	-0.3
4,546,152	-		Shew_3818	0.46	+0.0
4,546,515	+		Shew_3818	0.63	+0.8
4,546,523	-		Shew_3818	0.63	+0.6
4,546,534	+		Shew_3818	0.63	+0.4
4,546,543	+		Shew_3818	0.64	+0.2
4,546,593	-		Shew_3818	0.66	+0.5
4,546,814	-		Shew_3818	0.76	+0.4
4,546,827	+		Shew_3818	0.76	-2.1
4,546,835	-		Shew_3818	0.77	+0.7
4,546,978	+		Shew_3818	0.83	+0.5
4,547,342	-				-0.8
4,547,342	-				-0.3
4,547,507	+		Shew_3819	0.32	-0.1
4,547,709	-		Shew_3819	0.76	+0.5
4,547,867	-				+0.2
4,547,867	-				+0.1
4,547,867	-				+0.3
4,547,867	-				+1.1
4,547,873	+				+0.3
4,547,879	-				-0.0
4,547,879	-				-0.1
4,547,883	+				+0.3
4,547,883	+				+0.1
4,547,883	+				+2.4
4,547,883	+				-0.3
4,547,883	+				+1.6
4,547,891	-				+0.1
4,548,020	-				+0.4
4,548,030	-				+0.1
4,548,030	-				-0.0
4,548,171	+				+0.2
4,548,174	-				+0.2
4,548,176	+				+1.2
4,548,176	+				-0.3
4,548,176	+				+0.0
4,548,189	-				-0.1
4,548,199	+				+0.4