Strain Fitness in Shewanella loihica PV-4 around Shew_3002

Experiment: Carbenicillin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.002 mg/ml
3,563,041	-		Shew_3001	0.59	-0.1
3,563,066	+		Shew_3001	0.60	+0.1
3,563,074	-		Shew_3001	0.60	-0.1
3,563,275	+		Shew_3001	0.69	+0.2
3,563,560	-		Shew_3001	0.83	+0.0
3,563,928	-				+0.4
3,563,938	-				+1.3
3,563,948	-				-0.4
3,564,231	+		Shew_3002	0.35	-0.1
3,564,368	+		Shew_3002	0.52	-0.4
3,564,453	-		Shew_3002	0.63	-0.5
3,564,986	-				-0.2
3,565,029	+				-0.7
3,565,037	-				-1.1
3,565,231	+	fadE	Shew_3003	0.13	+0.1
3,565,241	+	fadE	Shew_3003	0.13	-0.0
3,565,280	-	fadE	Shew_3003	0.15	+0.6
3,565,461	+	fadE	Shew_3003	0.23	-0.8
3,565,568	+	fadE	Shew_3003	0.28	-0.2
3,565,689	-	fadE	Shew_3003	0.33	-0.1
3,565,753	+	fadE	Shew_3003	0.36	+0.2
3,565,753	+	fadE	Shew_3003	0.36	-0.0