Strain Fitness in Shewanella loihica PV-4 around Shew_3000

Experiment: Carbenicillin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.002 mg/ml
3,559,100	-		Shew_2998	0.50	+0.4
3,559,139	-		Shew_2998	0.55	+0.3
3,559,160	-		Shew_2998	0.58	+0.2
3,559,579	+		Shew_2999	0.12	+0.1
3,559,679	+		Shew_2999	0.50	-0.7
3,559,742	+		Shew_2999	0.73	+0.0
3,559,789	-				-1.5
3,559,791	+				-1.3
3,559,794	-				-0.5
3,559,799	-				-0.0
3,559,834	-				+0.6
3,559,869	+				-0.2
3,559,879	+				-0.3
3,559,879	+				-0.9
3,559,879	+				-0.8
3,559,879	+				+0.2
3,559,919	-				-0.9
3,559,919	-				-0.8
3,559,938	-				+2.0
3,559,956	+				+0.2
3,560,031	+		Shew_3000	0.11	+0.2
3,560,031	+		Shew_3000	0.11	+0.0
3,560,259	-		Shew_3000	0.24	+0.6
3,560,297	+		Shew_3000	0.26	-0.2
3,560,305	-		Shew_3000	0.27	-0.1
3,560,522	+		Shew_3000	0.39	+0.2
3,560,541	-		Shew_3000	0.40	+0.2
3,560,600	+		Shew_3000	0.44	+0.7
3,560,600	+		Shew_3000	0.44	+0.5
3,560,887	+		Shew_3000	0.60	-0.8
3,561,059	+		Shew_3000	0.70	+0.1
3,561,067	-		Shew_3000	0.70	+0.1
3,561,067	-		Shew_3000	0.70	-0.3
3,561,147	+		Shew_3000	0.75	+0.4
3,561,147	+		Shew_3000	0.75	+0.0
3,561,474	-				+0.4
3,561,520	+				+0.2
3,561,627	+				+0.2
3,562,011	-		Shew_3001	0.11	+0.9
3,562,028	-		Shew_3001	0.12	+1.3
3,562,070	-		Shew_3001	0.14	+1.3
3,562,116	-		Shew_3001	0.16	+0.4
3,562,228	-		Shew_3001	0.21	+0.4
3,562,455	+		Shew_3001	0.32	+0.2
3,562,455	+		Shew_3001	0.32	+0.1
3,562,455	+		Shew_3001	0.32	+1.1
3,562,463	-		Shew_3001	0.32	+0.3