Experiment: Carbenicillin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1563 and Shew_1564 are separated by 125 nucleotides Shew_1564 and Shew_1565 are separated by 244 nucleotides Shew_1565 and Shew_1566 are separated by 35 nucleotides
Shew_1563: Shew_1563 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 1,793,391 to 1,795,610
_1563
Shew_1564: Shew_1564 - cold-shock DNA-binding domain-containing protein (RefSeq), at 1,795,736 to 1,795,942
_1564
Shew_1565: Shew_1565 - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 1,796,187 to 1,796,495
_1565
Shew_1566: Shew_1566 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 1,796,531 to 1,798,789
_1566
Position (kb) 1796
1797 Strain fitness (log2 ratio) -2
-1
0
1 at 1795.415 kb on + strand at 1795.496 kb on + strand at 1795.783 kb on + strand, within Shew_1564 at 1795.807 kb on + strand, within Shew_1564 at 1796.125 kb on + strand at 1796.133 kb on - strand at 1796.466 kb on + strand at 1796.474 kb on + strand at 1797.443 kb on - strand, within Shew_1566 at 1797.480 kb on + strand, within Shew_1566
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml remove 1,795,415 + -0.0 1,795,496 + +0.0 1,795,783 + Shew_1564 0.23 +0.4 1,795,807 + Shew_1564 0.34 -2.0 1,796,125 + -0.6 1,796,133 - -0.1 1,796,466 + -0.4 1,796,474 + -1.1 1,797,443 - Shew_1566 0.40 +1.2 1,797,480 + Shew_1566 0.42 +0.4
Or see this region's nucleotide sequence