Strain Fitness in Shewanella loihica PV-4 around Shew_1179

Experiment: Carbenicillin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.002 mg/ml
1,365,681	+				-0.3
1,365,691	-				+0.4
1,365,745	+				-2.2
1,365,746	-				+0.3
1,365,808	+				+0.2
1,365,808	+				+0.2
1,365,816	-				-0.2
1,365,829	+				+0.3
1,365,860	+				+0.6
1,365,882	+				+0.1
1,365,922	-				+0.1
1,365,922	-				+0.2
1,365,922	-				+0.2
1,366,125	-				+0.9
1,366,567	+				+0.2
1,366,582	+				-1.4
1,366,590	+				-0.1
1,366,592	+				-0.3
1,366,597	-				-0.5
1,366,602	+				-0.4
1,366,605	-				+0.1
1,366,610	-				-0.4
1,366,610	-				+0.8
1,366,610	-				+0.2
1,366,610	-				-1.1
1,366,610	-				+0.1
1,366,616	+				-0.9
1,366,660	+				-1.6
1,366,725	-				+0.1
1,366,763	+				+0.5
1,366,817	+				-0.1
1,366,817	+				-1.7
1,366,840	+				+0.3
1,366,939	-				+0.1
1,366,946	-				+0.4
1,367,003	+				-0.4
1,367,003	+				-0.6
1,367,064	+		Shew_1179	0.11	+0.0
1,367,579	+		Shew_1179	0.25	-0.1
1,367,729	-		Shew_1179	0.29	-0.3
1,367,756	+		Shew_1179	0.30	-0.1
1,367,765	-		Shew_1179	0.30	+0.9
1,367,919	+		Shew_1179	0.34	+0.9
1,367,919	+		Shew_1179	0.34	-0.1
1,367,919	+		Shew_1179	0.34	+0.6
1,367,985	+		Shew_1179	0.36	+0.6
1,368,178	+		Shew_1179	0.42	+3.2
1,368,189	-		Shew_1179	0.42	-1.3
1,368,261	-		Shew_1179	0.44	+0.2
1,368,349	-		Shew_1179	0.46	+0.3
1,368,374	-		Shew_1179	0.47	+0.6
1,368,380	+		Shew_1179	0.47	+0.8
1,368,457	-		Shew_1179	0.49	+0.2
1,368,674	-		Shew_1179	0.55	+0.7
1,368,947	-		Shew_1179	0.63	-0.1
1,368,959	-		Shew_1179	0.63	+0.5
1,369,629	-		Shew_1179	0.82	+0.3
1,369,774	+		Shew_1179	0.86	+0.2
1,369,826	+		Shew_1179	0.87	-0.4
1,369,975	-				+0.1
1,369,975	-				-2.8
1,370,023	-				+0.0
1,370,062	-				+0.3
1,370,151	+				-0.0
1,370,426	+		Shew_1180	0.17	+0.5
1,370,478	-		Shew_1180	0.34	+0.6
1,370,507	+		Shew_1180	0.43	-0.5
1,370,582	+		Shew_1180	0.67	+0.2
1,370,590	-		Shew_1180	0.70	+0.3
1,370,648	-		Shew_1180	0.88	+0.1
1,370,648	-		Shew_1180	0.88	+1.3