Strain Fitness in Shewanella loihica PV-4 around Shew_1097

Experiment: Carbenicillin 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1095 and rpsT are separated by 221 nucleotidesrpsT and Shew_1097 are separated by 247 nucleotidesShew_1097 and Shew_1098 are separated by 65 nucleotides Shew_1095: Shew_1095 - ArsR family transcriptional regulator (RefSeq), at 1,263,446 to 1,263,742 _1095 Shew_1096: rpsT - 30S ribosomal protein S20 (RefSeq), at 1,263,964 to 1,264,230 rpsT Shew_1097: Shew_1097 - integral membrane protein MviN (RefSeq), at 1,264,478 to 1,266,037 _1097 Shew_1098: Shew_1098 - riboflavin biosynthesis protein RibF (RefSeq), at 1,266,103 to 1,267,038 _1098 Position (kb) 1264 1265 1266 1267Strain fitness (log2 ratio) -2 -1 0 1at 1263.499 kb on + strand, within Shew_1095at 1263.621 kb on - strand, within Shew_1095at 1264.355 kb on - strandat 1264.355 kb on - strandat 1264.355 kb on - strandat 1264.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.002 mg/ml
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1,263,499 + Shew_1095 0.18 +0.6
1,263,621 - Shew_1095 0.59 -0.8
1,264,355 - -2.4
1,264,355 - -2.1
1,264,355 - -2.7
1,264,371 + -1.0

Or see this region's nucleotide sequence